MOTIVATION: The completion of 168 genome sequences from a single population of Drosophila melanogaster provides a global view of genomic variation and an understanding of the evolutionary forces shaping the patterns of DNA polymorphism and divergence along the genome. RESULTS: We present the 'Population Drosophila Browser' (PopDrowser), a new genome browser specially designed for the automatic analysis and representation of genetic variation across the D. melanogaster genome sequence. PopDrowser allows estimating and visualizing the values of a number of DNA polymorphism and divergence summary statistics, linkage disequilibrium parameters and several neutrality tests. PopDrowser also allows performing custom analyses on-the-fly using user-selected parameters. AVAILABILITY: PopDrowser is freely available from http://PopDrowser.uab.cat.
MOTIVATION: The completion of 168 genome sequences from a single population of Drosophila melanogaster provides a global view of genomic variation and an understanding of the evolutionary forces shaping the patterns of DNA polymorphism and divergence along the genome. RESULTS: We present the 'Population Drosophila Browser' (PopDrowser), a new genome browser specially designed for the automatic analysis and representation of genetic variation across the D. melanogaster genome sequence. PopDrowser allows estimating and visualizing the values of a number of DNA polymorphism and divergence summary statistics, linkage disequilibrium parameters and several neutrality tests. PopDrowser also allows performing custom analyses on-the-fly using user-selected parameters. AVAILABILITY: PopDrowser is freely available from http://PopDrowser.uab.cat.
Authors: Margaret L I Hart; Ban L Vu; Quinten Bolden; Keith T Chen; Casey L Oakes; Lejla Zoronjic; Richard P Meisel Journal: J Mol Evol Date: 2018-06-21 Impact factor: 2.395
Authors: David Castellano; Marta Coronado-Zamora; Jose L Campos; Antonio Barbadilla; Adam Eyre-Walker Journal: Mol Biol Evol Date: 2015-10-22 Impact factor: 16.240