| Literature DB >> 29924900 |
Josephina A N Meester1, Maja Sukalo2, Kim C Schröder2, Denny Schanze2, Gareth Baynam3,4,5, Guntram Borck6, Nuria C Bramswig7, Duygu Duman8, Brigitte Gilbert-Dussardier9, Muriel Holder-Espinasse10, Peter Itin11, Diana S Johnson12, Shelagh Joss13, Hannele Koillinen14, Fiona McKenzie15, Jenny Morton16, Heike Nelle17, Willie Reardon18, Claudia Roll19, Mustafa A Salih20, Ravi Savarirayan21, Ingrid Scurr22, Miranda Splitt23, Elizabeth Thompson24,25, Hannah Titheradge16, Colm P Travers26, Lionel Van Maldergem27, Margo Whiteford28, Dagmar Wieczorek29, Geert Vandeweyer1, Richard Trembath30, Lut Van Laer1, Bart L Loeys1, Martin Zenker2, Laura Southgate30,31, Wim Wuyts1.
Abstract
Adams-Oliver syndrome (AOS) is a rare developmental disorder, characterized by scalp aplasia cutis congenita (ACC) and transverse terminal limb defects (TTLD). Autosomal dominant forms of AOS are linked to mutations in ARHGAP31, DLL4, NOTCH1 or RBPJ, while DOCK6 and EOGT underlie autosomal recessive inheritance. Data on the frequency and distribution of mutations in large cohorts are currently limited. The purpose of this study was therefore to comprehensively examine the genetic architecture of AOS in an extensive cohort. Molecular diagnostic screening of 194 AOS/ACC/TTLD probands/families was conducted using next-generation and/or capillary sequencing analyses. In total, we identified 63 (likely) pathogenic mutations, comprising 56 distinct and 22 novel mutations, providing a molecular diagnosis in 30% of patients. Taken together with previous reports, these findings bring the total number of reported disease variants to 63, with a diagnostic yield of 36% in familial cases. NOTCH1 is the major contributor, underlying 10% of AOS/ACC/TTLD cases, with DLL4 (6%), DOCK6 (6%), ARHGAP31 (3%), EOGT (3%), and RBPJ (2%) representing additional causality in this cohort. We confirm the relevance of genetic screening across the AOS/ACC/TTLD spectrum, highlighting preliminary but important genotype-phenotype correlations. This cohort offers potential for further gene identification to address missing heritability.Entities:
Keywords: Adams-Oliver syndrome; Notch signaling; Rho GTPasezzm321990; genetics; mutation screening
Mesh:
Substances:
Year: 2018 PMID: 29924900 PMCID: PMC6175364 DOI: 10.1002/humu.23567
Source DB: PubMed Journal: Hum Mutat ISSN: 1059-7794 Impact factor: 4.878
Figure 1Genetic architecture of AOS. (a) Distribution of inheritance pattern across our AOS cohort. AD, autosomal dominant; AR, autosomal recessive. (b) Contribution of mutations in each of the six known genes to the development of AOS in the complete cohort and in familial cases only. For each cohort, charts depict the gene distribution excluding VUS and when all VUS are considered as pathogenic, respectively. (c) Distribution of mutation categories across established AOS genes. (d) Representation of previously reported and novel pathogenic mutations in NOTCH1. Mutations identified in this study that were previously reported in AOS patients are represented on the upper part of the figure. Novel mutations are arrayed below the schematic. EGF 11–13 highlights the ligand‐binding domain. Pathogenic mutations are depicted in black and VUS in red. ECD, Extracellular domain; ICD, Intracellular domain; EGF‐like, epidermal growth factor‐like domain; cbEGF‐like, calcium‐binding epidermal growth factor‐like domain; LNR, Lin‐12/Notch repeat; TM, transmembrane domain; RAM, RBP‐Jkappa‐associated module; ANK, ankyrin; TAD, transcriptional activation domain and PEST, proline (P), glutamic acid (E), serine (S), and threonine (T)‐rich peptide sequence.
Identified pathogenic mutations in six established AOS genes
| Fam ID | Gene | Zygosity | Nucleotide change | Amino acid change | Type of mutation | Pathogenicity class | Mutation previously reported | Reference of family |
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| 4 |
| Homozygous | c.484G > T | p.Glu162* | Nonsense | Pathogenic |
| Sukalo et al., |
| 6 |
| Homozygous | c.1296_1297delinsT | p.Gln434Argfs*21 | Frameshift | Pathogenic |
| Sukalo et al., |
| 8 |
| Homozygous | c.2520dupT | p.Arg841Serfs*6 | Frameshift | Pathogenic |
| Sukalo et al., |
| 9 |
| Homozygous | c.3047T > C | p.Leu1016Pro | Missense | Likely pathogenic |
| Sukalo et al., |
| 10 |
| Homozygous | c.3154G > A | p.Glu1052Lys | Missense | Likely pathogenic |
| Sukalo et al., |
| 11 |
| Homozygous | c.4786C > T | p.Arg1596Trp | Missense | Likely pathogenic |
| Sukalo et al., |
| 13 |
| Homozygous | c.5235+205_6102‐15delinsCATGGGGCTG | 4.3 kb deletion | Deletion | Pathogenic |
| Sukalo et al., |
| 5 |
| Compound heterozygous | c.788T > A | p.Val263Asp | Missense | Likely pathogenic |
| Sukalo et al., |
| c.5939+2T > C | p.? | Splicing | Pathogenic | |||||
| 7 |
| Compound heterozygous | c.1902_1905delGTTC | p.Phe635Profs*32 | Frameshift | Pathogenic |
| Sukalo et al., |
| c.4106+5G > T | p.? | Splicing | Likely pathogenic | |||||
| 1 |
| Homozygous | c.311+1G > T | p.? | Splicing | Pathogenic | Novel mutation | ‐ |
| 2 |
| Homozygous | c.404G > A | p.Cys135Tyr | Missense | Pathogenic | Novel mutation | ‐ |
| 3 |
| Homozygous | c.1130G > A | p.Arg377Gln | Missense | Likely pathogenic |
| Temtamy et al., 2007 (Family 2) |
| 59 |
| Compound heterozygous | c.78_81delTCAC | p.His27Alafs*46 | Frameshift | Pathogenic | Novel mutation | Verdyck et al., |
| c.1335‐1G > A | p.? | Splicing | Pathogenic | Novel mutation | ||||
|
| ||||||||
| 40 |
| Heterozygous | c.2047C > T | p.Gln683* | Nonsense | Pathogenic |
| Southgate et al., |
| 41 |
| Heterozygous | c.2047C > T | p.Gln683* | Nonsense | Pathogenic |
|
|
| 42 |
| Heterozygous | c.2063_2064insTT | p.Ser689* | Nonsense | Pathogenic |
| Isrie et al., |
| 43 |
| Heterozygous | c.3260delA | p.Lys1087Serfs*4 | Frameshift | Pathogenic |
| Southgate et al., |
| 55 |
| Heterozygous | c.556C > T | p.Arg186Cys | Missense | Likely pathogenic |
| Meester et al., |
| 56 |
| Heterozygous | c.1168T > C | p.Cys390Arg | Missense | Pathogenic |
| Meester et al., |
| 57 |
| Heterozygous | c.1365C > G | p.Cys455Trp | Missense | Pathogenic |
| Meester et al., |
| 58 |
| Heterozygous | c.1660C > T | p.Gln554* | Nonsense | Pathogenic |
| Meester et al., |
| 181 |
| Heterozygous | c.1825C > T | p.Gln609* | Nonsense | Pathogenic | Novel mutation; | ‐ |
| 14 |
| Heterozygous | c.415C > T | p.Gln139* | Nonsense | Pathogenic | Novel mutation | ‐ |
| 46 |
| Heterozygous | c.794_797delinsCC | p.Asn265Thrfs*65 | Frameshift | Pathogenic | Novel mutation | ‐ |
| 47 |
| Heterozygous | c.1649dupA | p.Tyr550* | Nonsense | Pathogenic |
| Southgate et al., |
| 48 |
| Heterozygous | c.1935_1936delTG | p.Ala646Glnfs*21 | Frameshift | Pathogenic | Novel mutation | Savarirayan et al., 1999 |
| 50 |
| Heterozygous | c.4120T > C | p.Cys1374Arg | Missense | Pathogenic |
| Southgate et al., |
| 52 |
| Heterozygous | c.4663G > T | p.Glu1555* | Nonsense | Pathogenic |
| Southgate et al., |
| 54 |
| Heterozygous | c.6049_6050delTC | p.Ser2017Thrfs*9 | Frameshift | Pathogenic |
| Southgate et al., |
| 44 |
| Heterozygous | c.193A > G | p.Arg65Gly | Missense | Likely pathogenic | Novel mutation |
|
| 175 |
| Heterozygous | c.196T > G | p.Phe66Val | Missense | Likely pathogenic | Novel mutation | ‐ |
| 45 |
| Heterozygous | c.505A > G | p.Lys169Glu | Missense | Pathogenic |
| ‐ |
| 178 |
| Heterozygous | c.996C > A | p.Ser332Arg | Missense | Likely pathogenic | Novel mutation | ‐ |
|
| ||||||||
| 17 |
| Heterozygous | c.2047C > T | p.Gln683* | Nonsense | Pathogenic |
|
|
| 18 |
| Heterozygous | c.2182C > T | p.Gln728* | Nonsense | Pathogenic | Novel mutation |
|
| 30 |
| Heterozygous | c.361G > C | p.Ala121Pro | Missense | Likely pathogenic |
| Meester et al., |
| 31 |
| Heterozygous | c.572G > A | p.Arg191His | Missense | Likely pathogenic |
| ‐ |
| 32 |
| Heterozygous | c.583T > C | p.Phe195Leu | Missense | Likely pathogenic |
| Meester et al., |
| 182 |
| Heterozygous | c.949A > C | p.Thr317Pro | Missense | Likely pathogenic | Novel mutation; | ‐ |
| 34 |
| Heterozygous | c.1169G > A | p.Cys390Tyr | Missense | Pathogenic |
| Meester et al., |
| 196 |
| Heterozygous | c.1310G > C | p.Cys437Ser | Missense | Pathogenic | Novel mutation | ‐ |
| 35 |
| Heterozygous | c.1397G > A | p.Cys466Tyr | Missense | Pathogenic | Novel mutation; | ‐ |
| 36 |
| Compound heterozygous | c.484G > T | p.Glu162* | Nonsense | Pathogenic |
| Romani et al., 1998 |
| c.1362_1365delAACT | p.Thr455Serfs*24 | Frameshift | Pathogenic |
| ||||
| 37 |
| Compound heterozygous | c.1362_1365delAACT | p.Thr455Serfs*24 | Frameshift | Pathogenic |
| Sukalo et al., |
| c.4491+1G > A | p.? | Splicing | Pathogenic |
| ||||
| 38 |
| Homozygous | c.78_81delTCAC | p.His27Alafs*46 | Frameshift | Pathogenic | Novel mutation | ‐ |
| 39 |
| Homozygous | c.78_81delTCAC | p.His27Alafs*46 | Frameshift | Pathogenic | Novel mutation | ‐ |
| 22 |
| Heterozygous | c.1343G > A | p.Arg448Gln | Missense | Pathogenic |
| Southgate et al., |
| 23 |
| Heterozygous | c.1343G > A | p.Arg448Gln | Missense | Pathogenic |
| Southgate et al., |
| 24 |
| Heterozygous | c.1345T > C | p.Cys449Arg | Missense | Pathogenic |
| Southgate et al., |
| 25 |
| Heterozygous | c.1367G > A | p.Cys456Tyr | Missense | Pathogenic |
| Southgate et al., |
| 21 |
| Heterozygous | c.1393G > A | p.Ala465Thr | Missense | Likely pathogenic | Novel mutation | ‐ |
| 26 |
| Heterozygous | c.1669+5G > A | p.? | Splicing | Pathogenic | Novel mutation | ‐ |
| 27 |
| Heterozygous | c.2380G > T | p.Glu794* | Nonsense | Pathogenic | Novel mutation | ‐ |
| 15 |
| Heterozygous | c.2704C > T | p.Arg902Cys | Missense | Pathogenic | Novel mutation |
|
| 49 |
| Heterozygous | c.3281G > A | p.Cys1094Tyr | Missense | Pathogenic | Novel mutation |
|
| 198 |
| Heterozygous | c.4222G > T | p.Glu1408* | Nonsense | Pathogenic | Novel mutation; | ‐ |
| 183 |
| Heterozygous | c.4549G > A | p.Asp1517Asn | Missense | Likely pathogenic | Novel mutation; | Verdyck et al., |
| 28 |
| Heterozygous | c.4739dup | p.Met1580Ilefs*30 | Frameshift | Pathogenic |
| Southgate et al., |
GenBank reference sequence and version number for ARHGAP31: NM_020754.3; DLL4: NM_019074.3; DOCK6: NM_020812.3; EOGT: NM_001278689.1; NOTCH1: NM_017617.4; RBPJ: NM_005349.3; numbering is from +1 as A of the ATG initiation codon.
This column refers to medical case reports in which clinical features observed in specific families are described.
Mutation was found in the same family as described in this publication.
Mutation published previously in a different family.
Exon skipping was verified at the RNA level.
Phenotype of mutation‐positive AOS patients
| Fam ID | Gene | ACC (HP:0007385) | TTLD | Cardiac features (HPO id) | Vascular features (HPO id) | Other (HPO id) | Reference of family |
|---|---|---|---|---|---|---|---|
|
| |||||||
| 4 |
| + | + | ? | ? | ? | Sukalo et al., |
| 6 |
| + | + | ? | CMTC (HP:0000965) | IUGR (HP:0001511), brain abnormalities (HP:0000707), microcephaly (HP:0000252), ocular anomalies (HP:0000478), cognitive impairment (HP:0100543), epilepsy (HP:0001250), cerebral palsy (HP:0100021), abdominal skin defect | Sukalo et al., |
| 8 |
| + | + | ? | ? | Microcephaly (HP:0000252), ventricular dilatation/brain atrophy (HP:0002119; HP:0012444), corpus callosum hypoplasia/atrophy (HP:0007370), periventricular lesions (HP:0002518) | Sukalo et al., |
| 9 |
| + | + | − | ? | Microcephaly (HP:0000252), ocular anomalies (HP:0000478), developmental delay (HP:0001263), epilepsy (HP:0001250), high palate (HP:0000218) | Sukalo et al., |
| 10 |
| + | + | − | ? | IUGR (HP:0001511), microcephaly (HP:0000252), brain abnormalities (HP:0000707), ocular anomalies (HP:0000478), cognitive impairment (HP:0100543), epilepsy (HP:0001250), cryptorchidism (HP:0000028) | Sukalo et al., |
| 11 |
| + | + | PDA (HP:0001643) | ? | Brain abnormalities (HP:0000707), microcephaly (HP:0000252), ocular anomalies (HP:0000478), knee dislocation (HP:0004976) | Sukalo et al., |
| 13 |
| + | + | ? | ? | Periventricular lesions (HP:0002518) | Sukalo et al., |
| 5 |
| + | + | VSD (HP:0001629) | ? | IUGR (HP:0001511), microcephaly (HP:0000252), brain abnormalities (HP:0000707), ocular anomalies (HP:0000478), cognitive impairment (HP:0100543), epilepsy (HP:0001250), cerebral palsy (HP:0100021), abdominal skin defects, patella defects (HP:0003045) | Sukalo et al., |
| 7 |
| + | + | TAPVD (HP:0005160) | ? | IUGR (HP:0001511), microcephaly (HP:0000252), brain abnormalities (HP:0000707), ocular anomalies (HP:0000478), cognitive impairment (HP:0100543), epilepsy (HP:0001250), abdominal skin defect, hypothyroidism (HP:0000821) | Sukalo et al., |
| 1 |
| + | + | ? | CMTC (HP:0000965) | No other features; normal intelligence | − |
| 2 |
| + | − | ? | ? | ? | − |
| 3 |
| + | + | − | CMTC (HP:0000965) | − | Temtamy et al., 2007 (Family 2) |
| 59 |
| + | + | ? | ? | Cryptorchidism (HP:0000028) and small penis (HP:0000054), severe developmental delay (HP:0001263) | Verdyck et al., |
|
| |||||||
| 40 |
| + | + | ‐ | ? | − | Southgate et al., |
| 41 |
| ? | ? | ? | ? | ? | − |
| 42 |
| ‐ | + | − | − | − | Isrie et al., |
| 43 |
| + | + | − | ? | − | Southgate et al., |
| 55 |
| + | − | − | ? | ? | Meester et al., |
| 56 |
| + | + | ? | CMTC (HP:0000965), portal hypertension (HP:0001409), esophageal varices (HP:0002040) | Epilepsy (HP:0001250), learning difficulties, mild periventricular leukomalacia (HP:0006970), splenomegaly (HP:0001744), congenital liver fibrosis (HP:0002612) | Meester et al., |
| 57 |
| + | − | ? | ? | ? | Meester et al., |
| 58 |
| + | + | VSD (HP:0001629), tricuspid valve insufficiency (HP:0005180) | ? | ? | Meester et al., |
| 181 |
| + | + | ? | CMTC (HP:0000965) | ? | − |
| 14 |
| + | + | Aortic stenosis (HP:0001650) | ? | ? | − |
| 46 |
| + | − | ? | ? | ? | − |
| 47 |
| + | + | Aortic and pulmonary valve abnormalities (HP:0001646; HP:0001641) | CMTC (HP:0000965) | − | Southgate et al., |
| 48 |
| + | + | Pulmonic stenosis (HP:0001642) | ? | IUGR (HP:0001511), hypoplastic mandible (HP:0000347), cerebral cortical dysplasia (brain abnormalities) (HP:0000707) | Savarirayan et al., 1999 |
| 50 |
| + | + | ? | CMTC (HP:0000965) | − | Southgate et al., |
| 52 |
| + | + | Aortic stenosis (HP:0001650), CoA (HP:0001680), Parachute mitral valve (HP:0011571), VSD (HP:0001629) | ? | Long palpebral fissures (HP:0000637) | Southgate et al., |
| 54 |
| + | − | CoA (HP:0001680), BAV (HP:0001647), parachute mitral valve (nonstenotic with mild regurgitation) (HP:0011571) | ? | − | Southgate et al., |
| 44 |
| + | + | TOF (HP:0001636) | CMTC (HP:0000965), pulmonary branch stenosis | Brain abnormalities (HP:0000707) | − |
| 175 |
| − | + | Severe and complex malformative cardiopathy (HP:0001627) | ? | Digestive malrotation (HP:0002566) | − |
| 45 |
| + | + | ? | ? | Microcephaly (HP:0000252), hip dislocation (HP:0002827) | − |
| 178 |
| + | + | Secundum ASD (HP:0001631) and partial anomalous pulmonary venous drainage (HP:0010773) | − | − | − |
|
| |||||||
| 17 |
| ? | ? | ? | ? | ? | − |
| 18 |
| + | + | ? | ? | − | − |
| 30 |
| + | + | Truncus arteriosus (HP:0001660), VSD (HP:0001629) | ? | Growth hormone deficiency (HP:0000824) | Meester et al., |
| 31 |
| + | + | ? | Died from bleeding left sinus transversus | ? | − |
| 32 |
| + | − | ? | ? | ? | Meester et al., |
| 182 |
| + | + | TOF (HP:0001636), absent pulmonary valve (HP:0005134) | Mild CMTC on thorax (HP:0000965), esophageal varices (HP:0002040), absent portal vein with portal hypertension (HP:0001409) | ? | − |
| 34 |
| + | − | ? | ? | ? | Meester et al., |
| 196 |
| + | + | TOF (HP:0001636) | ? | Preterm birth (HP:0001622), cystic leukomalacia, bilateral hypoplasia of optic nerves (HP:0000609), secondary microcephaly (HP:0005484), died from multiorgan failure after heart surgery | − |
| 35 |
| + | − | Long QT (HP:0001657) | ? | Club feet (HP:0001762), brain abnormalities (leukomalacia), microcephaly (HP:0000252), cognitive impairment (HP:0100543) | − |
| 36 |
| + | + | − | ? | IUGR (HP:0001511), brain abnormalities (HP:0000707), spasticity (HP:0001257), visual deficit (HP:0000505), intracranial calcifications (HP:0005671), global dilatation of ventricular system (HP:0002119) | Romani et al., 1998 |
| 37 |
| + | + | ? | CMTC (HP:0000965), single umbilical artery (HP:0001195) | Brain abnormalities (HP:0000707), microcephaly (HP:0000252), ocular anomalies (HP:0000478), cognitive impairment (HP:0100543), epilepsy (HP:0001250), cerebral palsy (HP:0100021), cryptorchidism (HP:0000028) | Sukalo et al., |
| 38 |
| + | − | ? | ? | ? | ‐ |
| 39 |
| + | − | ? | ? | ? | ‐ |
| 22 |
| + | − | VSD (HP:0001629), pulmonary atresia (HP:0004935), right MBTS, Rastelli correction | Portal vein thrombosis, portal hypertension (HP:0001409) | Cognitive impairment (HP:0100543), T‐cell lymphopenia (HP:0001888), complex learning disability, autism (HP:0000717) | Southgate et al., |
| 23 |
| + | + | ? | Large hepatofugal coronary vein, tiny hepatoportal cavernoma, portal hypertension (HP:0001409) | Obliterative portal venopathy, hepatosplenomegaly (HP:0001433) | Southgate et al., |
| 24 |
| + | + | PTA (HP:0001660), VSD (HP:0001629) | ? | − | Southgate et al., |
| 25 |
| + | + | ASD (HP:0001631) | CMTC (HP:0000965), hepatopetal and hepatofugal collateral veins, portal hypertension (HP:0001409) | Obliterative portal venopathy, hepatosplenomegaly (HP:0001433) | Southgate et al., |
| 21 |
| + | + | ? | CMTC (HP:0000965), missing portal vein | − | − |
| 26 |
| + | + | VSD (HP:0001629) | CMTC (HP:0000965) | − | − |
| 27 |
| + | + | ? | Sinus sagittalis thrombosis | ? | − |
| 15 |
| ? | ? | ? | ? | ? | − |
| 49 |
| + | + | − | CMTC (HP:0000965) | − | − |
| 198 |
| + | − | − | CMTC (HP:0000965) | Normal brain | − |
| 183 |
| + | + | − | ? | Full body CT normal, brain scan normal. Mildly delayed motor skills (HP:0002194)—walked at 15 months, slow speech—otherwise normal development | Verdyck et al., |
| 28 |
| + | + | − | CMTC (HP:0000965) | Epilepsy (HP:0001250), dyslexia (HP:0010522) | Southgate et al., |
ACC, aplasia cutis congenita; AS, aortic stenosis; ASD, atrial septal defect; AV, aortic valve; CHD, congenital heart defect; CMTC, cutis marmorata telangiectatica congenita; CoA, coarctation of the aorta; CT, Computed Tomography; IUGR, intrauterine growth restriction; MBTS, modified Blalock‐Taussig shunt; MV, mitral valve; PH, portal hypertension; PDA, patent ductus arteriosus; PTA, persistent truncus arteriosus; PV, pulmonary valve; TAPVD, total anomalous pulmonary venous drainage; TOF, Tetralogy of Fallot; TTLD, terminal transverse limb defects; TVI, tricuspid valve insufficiency; VSD, ventricular septal defect; ?, unknown; −, absent; +, present
This column refers to medical case reports in which clinical features observed in specific families are described.