Literature DB >> 29923293

Terminal Hydride Species in [FeFe]-Hydrogenases Are Vibrationally Coupled to the Active Site Environment.

Cindy C Pham1, David W Mulder2, Vladimir Pelmenschikov3, Paul W King2, Michael W Ratzloff2, Hongxin Wang1, Nakul Mishra1, Esen E Alp4, Jiyong Zhao4, Michael Y Hu4, Kenji Tamasaku5, Yoshitaka Yoda5, Stephen P Cramer1.   

Abstract

A combination of nuclear resonance vibrational spectroscopy (NRVS), FTIR spectroscopy, and DFT calculations was used to observe and characterize Fe-H/D bending modes in CrHydA1 [FeFe]-hydrogenase Cys-to-Ser variant C169S. Mutagenesis of cysteine to serine at position 169 changes the functional group adjacent to the H-cluster from a -SH to -OH, thus altering the proton transfer pathway. The catalytic activity of C169S is significantly reduced compared to that of native CrHydA1, presumably owing to less efficient proton transfer to the H-cluster. This mutation enabled effective capture of a hydride/deuteride intermediate and facilitated direct detection of the Fe-H/D normal modes. We observed a significant shift to higher frequency in an Fe-H bending mode of the C169S variant, as compared to previous findings with reconstituted native and oxadithiolate (ODT)-substituted CrHydA1. On the basis of DFT calculations, we propose that this shift is caused by the stronger interaction of the -OH group of C169S with the bridgehead -NH- moiety of the active site, as compared to that of the -SH group of C169 in the native enzyme.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  FTIR spectroscopy; enzyme catalysis; hydride species; hydrogenases; nuclear resonance vibrational spectroscopy

Mesh:

Substances:

Year:  2018        PMID: 29923293      PMCID: PMC6812543          DOI: 10.1002/anie.201805144

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  27 in total

1.  Phonon density of states measured by inelastic nuclear resonant scattering.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-05-08       Impact factor: 9.161

2.  Catalytic turnover of [FeFe]-hydrogenase based on single-molecule imaging.

Authors:  Christopher Madden; Michael D Vaughn; Ismael Díez-Pérez; Katherine A Brown; Paul W King; Devens Gust; Ana L Moore; Thomas A Moore
Journal:  J Am Chem Soc       Date:  2011-10-03       Impact factor: 15.419

3.  Proton Coupled Electronic Rearrangement within the H-Cluster as an Essential Step in the Catalytic Cycle of [FeFe] Hydrogenases.

Authors:  Constanze Sommer; Agnieszka Adamska-Venkatesh; Krzysztof Pawlak; James A Birrell; Olaf Rüdiger; Edward J Reijerse; Wolfgang Lubitz
Journal:  J Am Chem Soc       Date:  2017-01-17       Impact factor: 15.419

4.  Artificial hydrogenases.

Authors:  Bryan E Barton; Matthew T Olsen; Thomas B Rauchfuss
Journal:  Curr Opin Biotechnol       Date:  2010-03-30       Impact factor: 9.740

5.  Importance of the protein framework for catalytic activity of [FeFe]-hydrogenases.

Authors:  Philipp Knörzer; Alexey Silakov; Carina E Foster; Fraser A Armstrong; Wolfgang Lubitz; Thomas Happe
Journal:  J Biol Chem       Date:  2011-11-22       Impact factor: 5.157

6.  Direct Observation of an Iron-Bound Terminal Hydride in [FeFe]-Hydrogenase by Nuclear Resonance Vibrational Spectroscopy.

Authors:  Edward J Reijerse; Cindy C Pham; Vladimir Pelmenschikov; Ryan Gilbert-Wilson; Agnieszka Adamska-Venkatesh; Judith F Siebel; Leland B Gee; Yoshitaka Yoda; Kenji Tamasaku; Wolfgang Lubitz; Thomas B Rauchfuss; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2017-03-20       Impact factor: 15.419

7.  The quest for a functional substrate access tunnel in FeFe hydrogenase.

Authors:  Thomas Lautier; Pierre Ezanno; Carole Baffert; Vincent Fourmond; Laurent Cournac; Juan C Fontecilla-Camps; Philippe Soucaille; Patrick Bertrand; Isabelle Meynial-Salles; Christophe Léger
Journal:  Faraday Discuss       Date:  2011       Impact factor: 4.008

8.  Molecular dynamics study of the proposed proton transport pathways in [FeFe]-hydrogenase.

Authors:  Bojana Ginovska-Pangovska; Ming-Hsun Ho; John C Linehan; Yuhui Cheng; Michel Dupuis; Simone Raugei; Wendy J Shaw
Journal:  Biochim Biophys Acta       Date:  2013-08-24

9.  Spontaneous activation of [FeFe]-hydrogenases by an inorganic [2Fe] active site mimic.

Authors:  Camilla Lambertz; Agnieszka Adamska-Venkates; Trevor Simmons; Julian Esselborn; Gustav Berggren; Jens Noth; Judith Siebel; Anja Hemschemeier; Vincent Artero; Edward Reijerse; Marc Fontecave; Wolfgang Lubitz; Thomas Happe
Journal:  Nat Chem Biol       Date:  2013-08-11       Impact factor: 15.040

10.  Cyanide-bridged iron complexes as biomimetics of tri-iron arrangements in maturases of the H cluster of the di-iron hydrogenase.

Authors:  Allen M Lunsford; Christopher C Beto; Shengda Ding; Özlen F Erdem; Ning Wang; Nattamai Bhuvanesh; Michael B Hall; Marcetta Y Darensbourg
Journal:  Chem Sci       Date:  2016-02-29       Impact factor: 9.825

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  12 in total

Review 1.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

2.  Nuclear Resonance Vibrational Spectroscopy: A Modern Tool to Pinpoint Site-Specific Cooperative Processes.

Authors:  Hongxin Wang; Artur Braun; Stephen P Cramer; Leland B Gee; Yoshitaka Yoda
Journal:  Catalysts       Date:  2021-08-02       Impact factor: 4.501

3.  The E2 state of FeMoco: Hydride Formation versus Fe Reduction and a Mechanism for H2 Evolution.

Authors:  Albert Th Thorhallsson; Ragnar Bjornsson
Journal:  Chemistry       Date:  2021-10-15       Impact factor: 5.020

4.  Crystallographic and spectroscopic assignment of the proton transfer pathway in [FeFe]-hydrogenases.

Authors:  Jifu Duan; Moritz Senger; Julian Esselborn; Vera Engelbrecht; Florian Wittkamp; Ulf-Peter Apfel; Eckhard Hofmann; Sven T Stripp; Thomas Happe; Martin Winkler
Journal:  Nat Commun       Date:  2018-11-09       Impact factor: 14.919

5.  Energetics for Proton Reduction in FeFe Hydrogenase.

Authors:  Per E M Siegbahn; Rong-Zhen Liao
Journal:  J Phys Chem A       Date:  2020-12-04       Impact factor: 2.781

6.  Vibrational Perturbation of the [FeFe] Hydrogenase H-Cluster Revealed by 13C2H-ADT Labeling.

Authors:  Vladimir Pelmenschikov; James A Birrell; Leland B Gee; Casseday P Richers; Edward J Reijerse; Hongxin Wang; Simon Arragain; Nakul Mishra; Yoshitaka Yoda; Hiroaki Matsuura; Lei Li; Kenji Tamasaku; Thomas B Rauchfuss; Wolfgang Lubitz; Stephen P Cramer
Journal:  J Am Chem Soc       Date:  2021-05-27       Impact factor: 15.419

7.  Asymmetry in the Ligand Coordination Sphere of the [FeFe] Hydrogenase Active Site Is Reflected in the Magnetic Spin Interactions of the Aza-propanedithiolate Ligand.

Authors:  Edward J Reijerse; Vladimir Pelmenschikov; James A Birrell; Casseday P Richers; Martin Kaupp; Thomas B Rauchfuss; Stephen P Cramer; Wolfgang Lubitz
Journal:  J Phys Chem Lett       Date:  2019-10-21       Impact factor: 6.475

8.  Spectroscopic and Computational Evidence that [FeFe] Hydrogenases Operate Exclusively with CO-Bridged Intermediates.

Authors:  James A Birrell; Vladimir Pelmenschikov; Nakul Mishra; Hongxin Wang; Yoshitaka Yoda; Kenji Tamasaku; Thomas B Rauchfuss; Stephen P Cramer; Wolfgang Lubitz; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2019-12-30       Impact factor: 15.419

9.  Integrated bio-metal science: New frontiers of bio-metal science opened with cutting-edge techniques.

Authors:  Hitomi Sawai; Koichiro Ishimori
Journal:  Biophys Physicobiol       Date:  2020-08-28

10.  Vibrational characterization of a diiron bridging hydride complex - a model for hydrogen catalysis.

Authors:  Leland B Gee; Vladimir Pelmenschikov; Hongxin Wang; Nakul Mishra; Yu-Chiao Liu; Yoshitaka Yoda; Kenji Tamasaku; Ming-Hsi Chiang; Stephen P Cramer
Journal:  Chem Sci       Date:  2020-05-06       Impact factor: 9.825

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