Literature DB >> 29901835

Geant4-DNA example applications for track structure simulations in liquid water: A report from the Geant4-DNA Project.

S Incerti1,2, I Kyriakou3, M A Bernal4, M C Bordage5,6, Z Francis7, S Guatelli8,9, V Ivanchenko10,11, M Karamitros12, N Lampe13, S B Lee14, S Meylan15, C H Min16, W G Shin16, P Nieminen17, D Sakata1,2,8, N Tang18, C Villagrasa18, H N Tran19,20, J M C Brown21.   

Abstract

This Special Report presents a description of Geant4-DNA user applications dedicated to the simulation of track structures (TS) in liquid water and associated physical quantities (e.g., range, stopping power, mean free path…). These example applications are included in the Geant4 Monte Carlo toolkit and are available in open access. Each application is described and comparisons to recent international recommendations are shown (e.g., ICRU, MIRD), when available. The influence of physics models available in Geant4-DNA for the simulation of electron interactions in liquid water is discussed. Thanks to these applications, the authors show that the most recent sets of physics models available in Geant4-DNA (the so-called "option4" and "option 6" sets) enable more accurate simulation of stopping powers, dose point kernels, and W-values in liquid water, than the default set of models ("option 2") initially provided in Geant4-DNA. They also serve as reference applications for Geant4-DNA users interested in TS simulations.
© 2018 American Association of Physicists in Medicine.

Entities:  

Keywords:  Geant4-DNA; Monte Carlo; dosimetry; liquid water; track structure

Year:  2018        PMID: 29901835     DOI: 10.1002/mp.13048

Source DB:  PubMed          Journal:  Med Phys        ISSN: 0094-2405            Impact factor:   4.071


  46 in total

1.  Systematic microdosimetric data for protons of therapeutic energies calculated with Geant4-DNA.

Authors:  Oleg N Vassiliev; Christine B Peterson; Wenhua Cao; David R Grosshans; Radhe Mohan
Journal:  Phys Med Biol       Date:  2019-11-04       Impact factor: 3.609

2.  Monte Carlo single-cell dosimetry using Geant4-DNA: the effects of cell nucleus displacement and rotation on cellular S values.

Authors:  Ramak Salim; Payvand Taherparvar
Journal:  Radiat Environ Biophys       Date:  2019-03-29       Impact factor: 1.925

3.  Independent reaction times method in Geant4-DNA: Implementation and performance.

Authors:  José Ramos-Méndez; Wook-Geun Shin; Mathieu Karamitros; Jorge Domínguez-Kondo; Ngoc Hoang Tran; Sebastien Incerti; Carmen Villagrasa; Yann Perrot; Václav Štěpán; Shogo Okada; Eduardo Moreno-Barbosa; Bruce Faddegon
Journal:  Med Phys       Date:  2020-10-15       Impact factor: 4.071

4.  A parameter sensitivity study for simulating DNA damage after proton irradiation using TOPAS-nBio.

Authors:  Hongyu Zhu; Aimee L McNamara; Jose Ramos-Mendez; Stephen J McMahon; Nicholas T Henthorn; Bruce Faddegon; Kathryn D Held; Joseph Perl; Junli Li; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2020-04-23       Impact factor: 3.609

5.  DNA Condensation with a Boron-Containing Cationic Peptide for Modeling Boron Neutron Capture Therapy.

Authors:  Chris C Perry; Jose Ramos-Méndez; Jamie R Milligan
Journal:  Radiat Phys Chem Oxf Engl 1993       Date:  2019-10-10       Impact factor: 2.858

6.  Intercomparison of dose enhancement ratio and secondary electron spectra for gold nanoparticles irradiated by X-rays calculated using multiple Monte Carlo simulation codes.

Authors:  W B Li; A Belchior; M Beuve; Y Z Chen; S Di Maria; W Friedland; B Gervais; B Heide; N Hocine; A Ipatov; A P Klapproth; C Y Li; J L Li; G Multhoff; F Poignant; R Qiu; H Rabus; B Rudek; J Schuemann; S Stangl; E Testa; C Villagrasa; W Z Xie; Y B Zhang
Journal:  Phys Med       Date:  2020-01-06       Impact factor: 2.685

7.  TOPAS-nBio: An Extension to the TOPAS Simulation Toolkit for Cellular and Sub-cellular Radiobiology.

Authors:  J Schuemann; A L McNamara; J Ramos-Méndez; J Perl; K D Held; H Paganetti; S Incerti; B Faddegon
Journal:  Radiat Res       Date:  2019-01-04       Impact factor: 2.841

8.  Geometrical structures for radiation biology research as implemented in the TOPAS-nBio toolkit.

Authors:  Aimee L McNamara; José Ramos-Méndez; Joseph Perl; Kathryn Held; Naoki Dominguez; Eduardo Moreno; Nicholas T Henthorn; Karen J Kirkby; Sylvain Meylan; Carmen Villagrasa; Sebastien Incerti; Bruce Faddegon; Harald Paganetti; Jan Schuemann
Journal:  Phys Med Biol       Date:  2018-09-06       Impact factor: 3.609

9.  Challenges in the quantification approach to a radiation relevant adverse outcome pathway for lung cancer.

Authors:  Robert Stainforth; Jan Schuemann; Aimee L McNamara; Ruth C Wilkins; Vinita Chauhan
Journal:  Int J Radiat Biol       Date:  2020-09-30       Impact factor: 2.694

10.  LET-Dependent Intertrack Yields in Proton Irradiation at Ultra-High Dose Rates Relevant for FLASH Therapy.

Authors:  J Ramos-Méndez; N Domínguez-Kondo; J Schuemann; A McNamara; E Moreno-Barbosa; Bruce Faddegon
Journal:  Radiat Res       Date:  2020-10-02       Impact factor: 2.841

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