Literature DB >> 29900427

Liver tissue classification in patients with hepatocellular carcinoma by fusing structured and rotationally invariant context representation.

John Treilhard1, Susanne Smolka2,3, Lawrence Staib1,4,2, Julius Chapiro2, MingDe Lin2,5, Georgy Shakirin6, James Duncan1,4,2.   

Abstract

This work addresses multi-class liver tissue classification from multi-parameter MRI in patients with hepatocellular carcinoma (HCC), and is among the first to do so. We propose a structured prediction framework to simultaneously classify parenchyma, blood vessels, viable tumor tissue, and necrosis, which overcomes limitations related to classifying these tissue classes individually and consecutively. A novel classification framework is introduced, based on the integration of multi-scale shape and appearance features to initiate the classification, which is iteratively refined by augmenting the feature space with both structured and rotationally invariant label context features. We study further the topic of rotationally invariant label context feature representations, and introduce a method for this purpose based on computing the energies of the spherical harmonic decompositions computed at different frequencies and radii. We test our method on full 3D multi-parameter MRI volumes from 47 patients with HCC and achieve promising results.

Entities:  

Keywords:  HCC; MRI; classification; rotationally invariant context features; spherical harmonics; structured prediction

Year:  2017        PMID: 29900427      PMCID: PMC5995317          DOI: 10.1007/978-3-319-66179-7_10

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  7 in total

1.  Auto-context and its application to high-level vision tasks and 3D brain image segmentation.

Authors:  Zhuowen Tu; Xiang Bai
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2010-10       Impact factor: 6.226

2.  Liver vessels segmentation using a hybrid geometrical moments/graph cuts method.

Authors:  Simon Esneault; Cyril Lafon; Jean-Louis Dillenseger
Journal:  IEEE Trans Biomed Eng       Date:  2009-09-25       Impact factor: 4.538

3.  Focal liver lesions: comparison of dual-phase CT and multisequence multiplanar MR imaging including dynamic gadolinium enhancement.

Authors:  R C Semelka; D R Martin; C Balci; T Lance
Journal:  J Magn Reson Imaging       Date:  2001-03       Impact factor: 4.813

4.  Semiautomatic volumetric tumor segmentation for hepatocellular carcinoma: comparison between C-arm cone beam computed tomography and MRI.

Authors:  Vania Tacher; MingDe Lin; Michael Chao; Lars Gjesteby; Nikhil Bhagat; Abdelkader Mahammedi; Roberto Ardon; Benoit Mory; Jean-François Geschwind
Journal:  Acad Radiol       Date:  2013-04       Impact factor: 3.173

5.  Global patterns of hepatocellular carcinoma management from diagnosis to death: the BRIDGE Study.

Authors:  Joong-Won Park; Minshan Chen; Massimo Colombo; Lewis R Roberts; Myron Schwartz; Pei-Jer Chen; Masatoshi Kudo; Philip Johnson; Samuel Wagner; Lucinda S Orsini; Morris Sherman
Journal:  Liver Int       Date:  2015-03-25       Impact factor: 5.828

Review 6.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

7.  Immunohistochemical analysis of breast tissue microarray images using contextual classifiers.

Authors:  Stephen J McKenna; Telmo Amaral; Shazia Akbar; Lee Jordan; Alastair Thompson
Journal:  J Pathol Inform       Date:  2013-03-30
  7 in total
  2 in total

1.  Liver Tissue Classification Using an Auto-context-based Deep Neural Network with a Multi-phase Training Framework.

Authors:  Fan Zhang; Junlin Yang; Nariman Nezami; Fabian Laage-Gaupp; Julius Chapiro; Ming De Lin; James Duncan
Journal:  Patch Based Tech Med Imaging (2018)       Date:  2018-09-15

Review 2.  Sparse Data-Driven Learning for Effective and Efficient Biomedical Image Segmentation.

Authors:  John A Onofrey; Lawrence H Staib; Xiaojie Huang; Fan Zhang; Xenophon Papademetris; Dimitris Metaxas; Daniel Rueckert; James S Duncan
Journal:  Annu Rev Biomed Eng       Date:  2020-03-13       Impact factor: 11.324

  2 in total

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