Literature DB >> 29899147

Conformational control and DNA-binding mechanism of the metazoan origin recognition complex.

Franziska Bleichert1, Alexander Leitner2, Ruedi Aebersold2,3, Michael R Botchan4, James M Berger5.   

Abstract

In eukaryotes, the heterohexameric origin recognition complex (ORC) coordinates replication onset by facilitating the recruitment and loading of the minichromosome maintenance 2-7 (Mcm2-7) replicative helicase onto DNA to license origins. Drosophila ORC can adopt an autoinhibited configuration that is predicted to prevent Mcm2-7 loading; how the complex is activated and whether other ORC homologs can assume this state are not known. Using chemical cross-linking and mass spectrometry, biochemical assays, and electron microscopy (EM), we show that the autoinhibited state of Drosophila ORC is populated in solution, and that human ORC can also adopt this form. ATP binding to ORC supports a transition from the autoinhibited state to an active configuration, enabling the nucleotide-dependent association of ORC with both DNA and Cdc6. An unstructured N-terminal region adjacent to the conserved ATPase domain of Orc1 is shown to be required for high-affinity ORC-DNA interactions, but not for activation. ORC optimally binds DNA duplexes longer than the predicted footprint of the ORC ATPases associated with a variety of cellular activities (AAA+) and winged-helix (WH) folds; cryo-EM analysis of Drosophila ORC bound to DNA and Cdc6 indicates that ORC contacts DNA outside of its central core region, bending the DNA away from its central DNA-binding channel. Our findings indicate that ORC autoinhibition may be common to metazoans and that ORC-Cdc6 remodels origin DNA before Mcm2-7 recruitment and loading.

Entities:  

Keywords:  AAA+ ATPase; DNA replication; helicase loading; initiators; origin recognition complex

Mesh:

Substances:

Year:  2018        PMID: 29899147      PMCID: PMC6042147          DOI: 10.1073/pnas.1806315115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  DNA topology, not DNA sequence, is a critical determinant for Drosophila ORC-DNA binding.

Authors:  Dirk Remus; Eileen L Beall; Michael R Botchan
Journal:  EMBO J       Date:  2004-02-05       Impact factor: 11.598

2.  ATPase-dependent cooperative binding of ORC and Cdc6 to origin DNA.

Authors:  Christian Speck; Zhiqiang Chen; Huilin Li; Bruce Stillman
Journal:  Nat Struct Mol Biol       Date:  2005-11       Impact factor: 15.369

3.  Coordinate binding of ATP and origin DNA regulates the ATPase activity of the origin recognition complex.

Authors:  R D Klemm; R J Austin; S P Bell
Journal:  Cell       Date:  1997-02-21       Impact factor: 41.582

4.  Stepwise assembly of initiation proteins at budding yeast replication origins in vitro.

Authors:  T Seki; J F Diffley
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

5.  A cytokinetic function of Drosophila ORC6 protein resides in a domain distinct from its replication activity.

Authors:  Igor N Chesnokov; Olga N Chesnokova; Michael Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-23       Impact factor: 11.205

6.  Multiple mechanisms contribute to Schizosaccharomyces pombe origin recognition complex-DNA interactions.

Authors:  Christopher R Houchens; Wenyan Lu; Ray-Yuan Chuang; Mark G Frattini; Alex Fuller; Pam Simancek; Thomas J Kelly
Journal:  J Biol Chem       Date:  2008-08-22       Impact factor: 5.157

7.  Cdc6-induced conformational changes in ORC bound to origin DNA revealed by cryo-electron microscopy.

Authors:  Jingchuan Sun; Hironori Kawakami; Juergen Zech; Christian Speck; Bruce Stillman; Huilin Li
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

8.  A Meier-Gorlin syndrome mutation in a conserved C-terminal helix of Orc6 impedes origin recognition complex formation.

Authors:  Franziska Bleichert; Maxim Balasov; Igor Chesnokov; Eva Nogales; Michael R Botchan; James M Berger
Journal:  Elife       Date:  2013-10-08       Impact factor: 8.140

Review 9.  The origin recognition complex protein family.

Authors:  Bernard P Duncker; Igor N Chesnokov; Brendan J McConkey
Journal:  Genome Biol       Date:  2009-03-17       Impact factor: 13.583

10.  Crystal structure of the eukaryotic origin recognition complex.

Authors:  Franziska Bleichert; Michael R Botchan; James M Berger
Journal:  Nature       Date:  2015-03-11       Impact factor: 49.962

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  15 in total

1.  A new class of disordered elements controls DNA replication through initiator self-assembly.

Authors:  Matthew W Parker; Maren Bell; Mustafa Mir; Jonchee A Kao; Xavier Darzacq; Michael R Botchan; James M Berger
Journal:  Elife       Date:  2019-09-27       Impact factor: 8.140

2.  Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA.

Authors:  Ernesto Arias-Palomo; Neha Puri; Valerie L O'Shea Murray; Qianyun Yan; James M Berger
Journal:  Mol Cell       Date:  2019-02-20       Impact factor: 17.970

Review 3.  A structural view of the initiators for chromosome replication.

Authors:  Kin Fan On; Matt Jaremko; Bruce Stillman; Leemor Joshua-Tor
Journal:  Curr Opin Struct Biol       Date:  2018-09-12       Impact factor: 6.809

4.  Multiple, short protein binding motifs in ORC1 and CDC6 control the initiation of DNA replication.

Authors:  Manzar Hossain; Kuhulika Bhalla; Bruce Stillman
Journal:  Mol Cell       Date:  2021-03-23       Impact factor: 17.970

5.  The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure.

Authors:  Hsiang-Chen Chou; Kuhulika Bhalla; Osama El Demerdesh; Olaf Klingbeil; Kaarina Hanington; Sergey Aganezov; Peter Andrews; Habeeb Alsudani; Kenneth Chang; Christopher R Vakoc; Michael C Schatz; W Richard McCombie; Bruce Stillman
Journal:  Elife       Date:  2021-02-01       Impact factor: 8.140

Review 6.  Caught in the act: structural dynamics of replication origin activation and fork progression.

Authors:  Jacob S Lewis; Alessandro Costa
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

7.  Structural mechanism of helicase loading onto replication origin DNA by ORC-Cdc6.

Authors:  Zuanning Yuan; Sarah Schneider; Thomas Dodd; Alberto Riera; Lin Bai; Chunli Yan; Indiana Magdalou; Ivaylo Ivanov; Bruce Stillman; Huilin Li; Christian Speck
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-15       Impact factor: 11.205

Review 8.  Origins of DNA replication.

Authors:  Babatunde Ekundayo; Franziska Bleichert
Journal:  PLoS Genet       Date:  2019-09-12       Impact factor: 5.917

9.  Structural insight into the assembly and conformational activation of human origin recognition complex.

Authors:  Jiaxuan Cheng; Ningning Li; Xiaohan Wang; Jiazhi Hu; Yuanliang Zhai; Ning Gao
Journal:  Cell Discov       Date:  2020-11-24       Impact factor: 10.849

10.  The structure of ORC-Cdc6 on an origin DNA reveals the mechanism of ORC activation by the replication initiator Cdc6.

Authors:  Xiang Feng; Yasunori Noguchi; Marta Barbon; Bruce Stillman; Christian Speck; Huilin Li
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 17.694

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