Literature DB >> 2988936

Queuosine modification of the wobble base in tRNAHis influences 'in vivo' decoding properties.

F Meier, B Suter, H Grosjean, G Keith, E Kubli.   

Abstract

The 'in vivo' decoding properties of four tRNAHis isoacceptors, two from Drosophila melanogaster and two from brewer's yeast, were studied after their microinjection, along with turnip yellow mosaic virus (TYMV) coat protein mRNA, into Xenopus laevis oocytes. The two Drosophila isoacceptors are identical besides containing either a guanosine (G) or the hypermodified nucleoside queuosine (Q) in the wobble position. The brewer's yeast isoacceptors differ by four bases in the anticodon stem, and by one base in the amino acceptor stem. Our results show that, under competing 'in vivo' conditions, the Drosophila tRNAHis with the anticodon GUG clearly prefers the histidine codon CAC to the codon CAU, whereas little preference is observed for the tRNAHis with the anticodon QUG for the codon CAU, and no preference for either codon by the two yeast isoacceptors. Hence, it can be concluded that the presence of the Q-base clearly affects the choice of the codon. This is the first demonstration of an 'in vivo' codon preference by tRNA isoacceptors differing in the modification of the wobble base during the elongation step of protein synthesis. These results imply that one function of the Q-base is at the translational level.

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Year:  1985        PMID: 2988936      PMCID: PMC554263          DOI: 10.1002/j.1460-2075.1985.tb03704.x

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  25 in total

1.  Distribution of the modified nucleoside Q and its derivatives in animal and plant transfer RNA's.

Authors:  H Kasai; Y Kuchino; K Nihei; S Nishimura
Journal:  Nucleic Acids Res       Date:  1975-10       Impact factor: 16.971

2.  Chromatographic and functional comparison of human placenta and HeLa cell tyrosine transfer ribonucleic acids.

Authors:  C E Olsen; E E Penhoet
Journal:  Biochemistry       Date:  1976-10-19       Impact factor: 3.162

3.  On the physical basis for ambiguity in genetic coding interactions.

Authors:  H J Grosjean; S de Henau; D M Crothers
Journal:  Proc Natl Acad Sci U S A       Date:  1978-02       Impact factor: 11.205

4.  Reversible inhibition by histidinol of protein synthesis in human cells at the activation of histidine.

Authors:  B S Hansen; M H Vaughan; L Wang
Journal:  J Biol Chem       Date:  1972-06-25       Impact factor: 5.157

5.  Activity of a transfer RNA modifying enzyme during the development of Drosophila and its relationship to the su(s) locus.

Authors:  B N White; G M Tener
Journal:  J Mol Biol       Date:  1973-03-15       Impact factor: 5.469

6.  Scintillation counting: a comparison of the counting efficiencies of serveral aqueous solubilizers.

Authors:  G W Carter; K V Dyke
Journal:  Anal Biochem       Date:  1973-08       Impact factor: 3.365

7.  Reiterated transfer RNA genes of Xenopus laevis.

Authors:  S G Clarkson; M L Birnstiel; V Serra
Journal:  J Mol Biol       Date:  1973-09-15       Impact factor: 5.469

8.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

9.  Compilation of tRNA sequences.

Authors:  M Sprinzl; D H Gauss
Journal:  Nucleic Acids Res       Date:  1984       Impact factor: 16.971

10.  Studies on the transfer RNA genes of Drosophila.

Authors:  T A Grigliatti; B N White; G M Tener; T C Kaufman; J J Holden; D T Suzuki
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1974
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  66 in total

Review 1.  Eucaryotic codes.

Authors:  F Caron
Journal:  Experientia       Date:  1990-12-01

2.  On the possible role of tRNA base modifications in the evolution of codon usage: queuosine and Drosophila.

Authors:  Ylenia Chiari; Kirstin Dion; James Colborn; Aristeidis Parmakelis; Jeffrey R Powell
Journal:  J Mol Evol       Date:  2010-03-24       Impact factor: 2.395

3.  The structural basis for recognition of the PreQ0 metabolite by an unusually small riboswitch aptamer domain.

Authors:  Robert C Spitale; Andrew T Torelli; Jolanta Krucinska; Vahe Bandarian; Joseph E Wedekind
Journal:  J Biol Chem       Date:  2009-03-04       Impact factor: 5.157

Review 4.  Metabolic influences on RNA biology and translation.

Authors:  Chien-Der Lee; Benjamin P Tu
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-02-02       Impact factor: 8.250

5.  The Effects of Ultraviolet Radiation on Nucleoside Modifications in RNA.

Authors:  Congliang Sun; Manasses Jora; Beulah Solivio; Patrick A Limbach; Balasubrahmanyam Addepalli
Journal:  ACS Chem Biol       Date:  2018-02-05       Impact factor: 5.100

6.  Cellular dynamics of RNA modification.

Authors:  Chengqi Yi; Tao Pan
Journal:  Acc Chem Res       Date:  2011-05-26       Impact factor: 22.384

7.  Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange.

Authors:  C Romier; K Reuter; D Suck; R Ficner
Journal:  EMBO J       Date:  1996-06-03       Impact factor: 11.598

8.  Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics.

Authors:  Joseph A Liberman; Krishna C Suddala; Asaminew Aytenfisu; Dalen Chan; Ivan A Belashov; Mohammad Salim; David H Mathews; Robert C Spitale; Nils G Walter; Joseph E Wedekind
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-23       Impact factor: 11.205

9.  Ribosomal frameshifting in response to hypomodified tRNAs in Xenopus oocytes.

Authors:  Bradley A Carlson; Byeong Jae Lee; Dolph L Hatfield
Journal:  Biochem Biophys Res Commun       Date:  2008-08-12       Impact factor: 3.575

10.  Translational selection is ubiquitous in prokaryotes.

Authors:  Fran Supek; Nives Skunca; Jelena Repar; Kristian Vlahovicek; Tomislav Smuc
Journal:  PLoS Genet       Date:  2010-06-24       Impact factor: 5.917

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