Literature DB >> 29887971

EFFICIENT REGISTRATION OF PATHOLOGICAL IMAGES: A JOINT PCA/IMAGE-RECONSTRUCTION APPROACH.

Xu Han1, Xiao Yang1, Stephen Aylward2, Roland Kwitt3, Marc Niethammer1.   

Abstract

Registration involving one or more images containing pathologies is challenging, as standard image similarity measures and spatial transforms cannot account for common changes due to pathologies. Low-rank/Sparse (LRS) decomposition removes pathologies prior to registration; however, LRS is memory-demanding and slow, which limits its use on larger data sets. Additionally, LRS blurs normal tissue regions, which may degrade registration performance. This paper proposes an efficient alternative to LRS: (1) normal tissue appearance is captured by principal component analysis (PCA) and (2) blurring is avoided by an integrated model for pathology removal and image reconstruction. Results on synthetic and BRATS 2015 data demonstrate its utility.

Entities:  

Year:  2017        PMID: 29887971      PMCID: PMC5989307          DOI: 10.1109/ISBI.2017.7950456

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  9 in total

1.  Non-rigid registration with missing correspondences in preoperative and postresection brain images.

Authors:  Nicha Chitphakdithai; James S Duncan
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

2.  Fast free-form deformation using graphics processing units.

Authors:  Marc Modat; Gerard R Ridgway; Zeike A Taylor; Manja Lehmann; Josephine Barnes; David J Hawkes; Nick C Fox; Sébastien Ourselin
Journal:  Comput Methods Programs Biomed       Date:  2009-10-08       Impact factor: 5.428

Review 3.  A probabilistic atlas of the human brain: theory and rationale for its development. The International Consortium for Brain Mapping (ICBM).

Authors:  J C Mazziotta; A W Toga; A Evans; P Fox; J Lancaster
Journal:  Neuroimage       Date:  1995-06       Impact factor: 6.556

4.  Spatial normalization of brain images with focal lesions using cost function masking.

Authors:  M Brett; A P Leff; C Rorden; J Ashburner
Journal:  Neuroimage       Date:  2001-08       Impact factor: 6.556

5.  Low-Rank Atlas Image Analyses in the Presence of Pathologies.

Authors:  Xiaoxiao Liu; Marc Niethammer; Roland Kwitt; Nikhil Singh; Matt McCormick; Stephen Aylward
Journal:  IEEE Trans Med Imaging       Date:  2015-06-22       Impact factor: 10.048

6.  Open access series of imaging studies: longitudinal MRI data in nondemented and demented older adults.

Authors:  Daniel S Marcus; Anthony F Fotenos; John G Csernansky; John C Morris; Randy L Buckner
Journal:  J Cogn Neurosci       Date:  2010-12       Impact factor: 3.225

7.  PORTR: Pre-operative and post-recurrence brain tumor registration.

Authors:  Dongjin Kwon; Marc Niethammer; Hamed Akbari; Michel Bilello; Christos Davatzikos; Kilian M Pohl
Journal:  IEEE Trans Med Imaging       Date:  2014-03       Impact factor: 10.048

Review 8.  Neuroimaging of structural pathology and connectomics in traumatic brain injury: Toward personalized outcome prediction.

Authors:  Andrei Irimia; Bo Wang; Stephen R Aylward; Marcel W Prastawa; Danielle F Pace; Guido Gerig; David A Hovda; Ron Kikinis; Paul M Vespa; John D Van Horn
Journal:  Neuroimage Clin       Date:  2012-08-24       Impact factor: 4.881

Review 9.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

  9 in total
  5 in total

1.  Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach.

Authors:  Xu Han; Roland Kwitt; Stephen Aylward; Spyridon Bakas; Bjoern Menze; Alexander Asturias; Paul Vespa; John Van Horn; Marc Niethammer
Journal:  Neuroimage       Date:  2018-05-04       Impact factor: 6.556

2.  Patient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI Scans.

Authors:  Xu Han; Spyridon Bakas; Roland Kwitt; Stephen Aylward; Hamed Akbari; Michel Bilello; Christos Davatzikos; Marc Niethammer
Journal:  Brainlesion       Date:  2019-01-26

3.  Deep learning-based simultaneous registration and unsupervised non-correspondence segmentation of medical images with pathologies.

Authors:  Julia Andresen; Timo Kepp; Jan Ehrhardt; Claus von der Burchard; Johann Roider; Heinz Handels
Journal:  Int J Comput Assist Radiol Surg       Date:  2022-03-03       Impact factor: 2.924

4.  A Deep Network for Joint Registration and Reconstruction of Images with Pathologies.

Authors:  Xu Han; Zhengyang Shen; Zhenlin Xu; Spyridon Bakas; Hamed Akbari; Michel Bilello; Christos Davatzikos; Marc Niethammer
Journal:  Mach Learn Med Imaging       Date:  2020-09-29

5.  Registration quality filtering improves robustness of voxel-wise analyses to the choice of brain template.

Authors:  Nelson Gil; Michael L Lipton; Roman Fleysher
Journal:  Neuroimage       Date:  2020-12-15       Impact factor: 6.556

  5 in total

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