Literature DB >> 21945692

SUMA.

Ziad S Saad1, Richard C Reynolds.   

Abstract

Surface-based brain imaging analysis offers the advantages of preserving the topology of cortical activation, increasing statistical power of group-level statistics, estimating cortical thickness, and visualizing with ease the pattern of activation across the whole cortex. SUMA is an open-source suite of programs for performing surface-based analysis and visualization. It was designed since its inception to allow for a fine control over the mapping between volume and surface domains, and for very fast and simultaneous display of multiple surface models and corresponding multitudes of datasets, all while maintaining a direct two-way link to volumetric data from which surface models and data originated. SUMA provides tools for performing spatial operations such as controlled smoothing, clustering, and interactive ROI drawing on folded surfaces in 3D, in addition to the various level-1 and level-2 FMRI statistics including FDR and FWE correction for multiple comparisons. In our contribution to this commemorative issue of Neuroimage we touch on the importance of surface-based analysis and provide a historic backdrop that motivated the creation of SUMA. We also highlight features that are particular to SUMA, notably the standardization procedure of meshes to greatly facilitate group-level analyses, and the ability to control SUMA's graphical interface from external programs making it possible to handle large collections of data with relative ease. Published by Elsevier Inc.

Entities:  

Mesh:

Year:  2011        PMID: 21945692      PMCID: PMC3260385          DOI: 10.1016/j.neuroimage.2011.09.016

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  17 in total

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6.  Defining functional areas in individual human brains using resting functional connectivity MRI.

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Authors:  B Fischl; M I Sereno; A M Dale
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10.  Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.

Authors:  Arno Klein; Jesper Andersson; Babak A Ardekani; John Ashburner; Brian Avants; Ming-Chang Chiang; Gary E Christensen; D Louis Collins; James Gee; Pierre Hellier; Joo Hyun Song; Mark Jenkinson; Claude Lepage; Daniel Rueckert; Paul Thompson; Tom Vercauteren; Roger P Woods; J John Mann; Ramin V Parsey
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  106 in total

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Journal:  J Neurosci       Date:  2018-05-08       Impact factor: 6.167

3.  FATCAT: (an efficient) Functional and Tractographic Connectivity Analysis Toolbox.

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4.  BOLD response to working memory not related to cortical thickness during early adolescence.

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Journal:  Brain Res       Date:  2013-09-04       Impact factor: 3.252

5.  Longitudinal white matter microstructural change in Parkinson's disease.

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Journal:  Hum Brain Mapp       Date:  2018-06-27       Impact factor: 5.038

6.  The Structural Correlates of Statistical Information Processing during Speech Perception.

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7.  Constructing Statistically Unbiased Cortical Surface Templates Using Feature-Space Covariance.

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Journal:  Neuroimage       Date:  2020-04-11       Impact factor: 6.556

9.  Untangling the relatedness among correlations, Part II: Inter-subject correlation group analysis through linear mixed-effects modeling.

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10.  Multimodal imaging of language reorganization in patients with left temporal lobe epilepsy.

Authors:  Yu-Hsuan A Chang; Nobuko Kemmotsu; Kelly M Leyden; N Erkut Kucukboyaci; Vicente J Iragui; Evelyn S Tecoma; Leena Kansal; Marc A Norman; Rachelle Compton; Tobin J Ehrlich; Vedang S Uttarwar; Anny Reyes; Brianna M Paul; Carrie R McDonald
Journal:  Brain Lang       Date:  2017-04-20       Impact factor: 2.381

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