| Literature DB >> 29880787 |
Xingshuang Yang1, Lan Zhang2, Lei Xie3.
Abstract
BACKGROUND The aim of this study was to assess the expression profile of the KIF26B gene, its effects on ovarian cancer cell behavior in vitro, the clinical prognostic value of expression of the KIF26B gene and associated signaling pathways, from bioinformatics data analysis. MATERIAL AND METHODS The Cancer Genome Atlas-Ovarian Cancer (TCGA-OV) database and the online Kaplan-Meier plotter for ovarian cancer were analyzed. Human ovarian cancer cell lines A2780 and SKOV3 were used to study the in vitro effects of KIF26B gene expression on cell proliferation and cell invasion. Genes that interacted with, co-localized to, and were co-expressed with the KIF26B gene (Pearson's r ≥0.6) were identified and underwent Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis. RESULTS Increased expression of the KIF26B gene increased the proliferation and migration of A2780 and SKOV3 cells in vitro. KIF26B protein expression was upregulated in ovarian cancer tissue and was associated with lymphatic and venous invasion. TCGA-OV data analysis showed that increased expression of the KIF26B gene was significantly associated with reduced 3-year, 5-year, and 10-year overall survival (OS), progression-free survival (PFS), and post-progression survival (PPS). The genes that interacted with, co-localized to, and were co-expressed with KIF26B were enriched in several KEGG pathways; upregulation of the KIF26B gene was associated with TGF-β signaling pathway. CONCLUSIONS Upregulation of KIF26B enhanced proliferation and migration of ovarian cancer cells in vitro. Bioinformatics analysis supported the association between increased expression of the KIF26B gene and reduced clinical outcome in patients with ovarian carcinoma.Entities:
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Year: 2018 PMID: 29880787 PMCID: PMC6022783 DOI: 10.12659/MSM.907889
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
Figure 1The KIF26B gene is not expressed in normal ovarian tissues, but is upregulated in ovarian cancer. (A, B) The expression of the KIF26B gene at the mRNA (A) and protein (B) levels in all human tissues. RNA-seq data are reported as median reads per kilobase per million mapped (RPKM) reads, and were generated by the Genotype-Tissue Expression (GTEx) project. (C, D) Representative images of immunohistochemistry (IHC) staining of KIF26B protein in normal ovarian tissues (C), and ovarian cancer tissues (D). Data were obtained from the Human Protein Atlas: () and ().
Figure 2Immunohistochemistry for detection of KIF26B protein product staining in ovarian cancer tissue. Of the cases of ovarian cancer from the Human Protein Atlas, that were 11 cases that showed mild immunohistochemical staining for expression of the KIF26B protein product, nine cases of that showed medium immunohistochemical staining for expression of the KIF26B protein product, and three cases that showed strong immunohistochemical staining for expression of the KIF26B protein product. Data were obtained from the Human Protein Atlas: ().
Figure 3Upregulation of the KIF26B gene is associated with lymphatic and venous invasion. (A, B) Box plots of expression of the KIF26B gene in patients with or without lymphatic invasion (A) or venous invasion (B). (C) Western blot analysis of KIF26B expression in A2780 and SKOV3 cells, 24 hours after transfection of KIF26B gene expression vectors or KIF26B short hairpin RNA (shRNA). (D, E) Cell proliferation of A2780 (D) and SKOV3 (E) cells after transfection, was evaluated using the cell counting kit-8 (CCK-8) assay. * p<0.05 and ** p<0.01 versus the vector control group, # p<0.05 and ## p<0.01 versus the shRNA control group. (F–I) Representative images (F, G) and quantitation (H, I) of transwell assay of invasion capability of A2780 (F, H) and SKOV3 (G and I) cells after transfection. * p<0.05 and ** p<0.01.
Figure 4High KIF26B gene expression is associated with poor overall survival (OS), progression-free survival (PFS), and post-progression survival (PPS) in patients with ovarian cancer. (A–C) Online Kaplan-Meier plotting of 3-year (A), 5-year (B), and 10-year (C) overall survival (OS) in ovarian cancer patients with high or low KIF26B gene expression. Data were obtained from The Cancer Genome Atlas-Ovarian Cancer (TCGA-OV) database. (D–F) Online Kaplan-Meier plotting (upper) of OS (D), FPS (E), and PPS (F) in patients with ovarian cancer with high/low KIF26B gene expression. Median survival was calculated (lower). Data were obtained from online Kaplan-Meier plotting.
Figure 5Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of KIF26B and its co-expressed genes in The Cancer Genome Atlas-Ovarian Cancer (TCGA-OV) database. (A) The proteins that interacted and co-localize with KIF26B. (B) Cancer-related Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways involving genes that interacted with, co-localized to, and were co-expressed with the KIF26B gene. (C) Western blot analysis of p-SMAD2 and SMAD2 expression in A2780 and SKOV3 cells, 46 hours following transfection of the KIF26B expression vectors or KIF26B shRNA.
Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis of the KIF26B gene and the interactive, co-localized, and co-expressed genes in breast cancer.
| GO ID | GO term | Term P value | % associated genes | Nr. genes | Associated genes found |
|---|---|---|---|---|---|
| GO: 0004512 | ECM-receptor interaction | 1.5E-9 | 13.41 | 11.00 | [COL1A1, COL1A2, COL4A1, COL6A2, COL6A3, HSPG2, ITGA11, ITGA5, LAMB1, THBS1, THBS2] |
| GO: 0004974 | Protein digestion and absorption | 57.0E-9 | 11.11 | 10.00 | [COL11A1, COL1A1, COL1A2, COL3A1, COL4A1, COL5A1, COL5A2, COL6A2, COL6A3, ELN] |
| GO: 0004510 | Focal adhesion | 310.0E-9 | 6.53 | 13.00 | [COL1A1, COL1A2, COL4A1, COL6A2, COL6A3, IGF1, ITGA11, ITGA5, LAMB1, PDGFRA, PDGFRB, THBS1, THBS2] |
| GO: 0004151 | PI3K-Akt signaling pathway | 1.1E-6 | 4.68 | 16.00 | [COL1A1, COL1A2, COL4A1, COL6A2, COL6A3, CREB3L1, FGF7, GNG2, IGF1, ITGA11, ITGA5, LAMB1, PDGFRA, PDGFRB, THBS1, THBS2] |
| GO: 0004933 | AGE-RAGE signaling pathway in diabetic complications | 120.0E-6 | 7.07 | 7.00 | [COL1A1, COL1A2, COL3A1, COL4A1, MMP2, SERPINE1, TGFB3] |
| GO: 0004390 | Hippo signaling pathway | 340.0E-6 | 5.19 | 8.00 | [DLG1, FRMD6, FZD1, GDF6, LATS2, SERPINE1, SNAI2, TGFB3] |
| GO: 0004270 | Vascular smooth muscle contraction | 420.0E-6 | 5.79 | 7.00 | [ACTA2, ACTG2, CALD1, EDNRA, MRVI1, PRKG1, PTGIR] |
| GO: 0005205 | Proteoglycans in cancer | 460.0E-6 | 4.43 | 9.00 | [CAMK2A, FZD1, HSPG2, IGF1, ITGA5, LUM, MMP2, THBS1, TIMP3] |
| GO: 0005146 | Amoebiasis | 740.0E-6 | 6.25 | 6.00 | [COL1A1, COL1A2, COL3A1, COL4A1, LAMB1, TGFB3] |
| GO: 0005144 | Malaria | 2.2E-3 | 8.16 | 4.00 | [LRP1, TGFB3, THBS1, THBS2] |
| GO: 0004350 | TGF-beta signaling pathway | 2.5E-3 | 5.95 | 5.00 | [GDF6, INHBA, NBL1, TGFB3, THBS1] |
| GO: 0004360 | Axon guidance | 3.6E-3 | 4.00 | 7.00 | [CAMK2A, CXCL12, NFATC2, SEMA3D, SEMA6B, SEMA7A, SLIT2] |
| GO: 0004392 | Hippo signaling pathway -multiple species | 4.2E-3 | 10.34 | 3.00 | [DCHS1, FRMD6, LATS2] |
| GO: 0004310 | Wnt signaling pathway | 5.6E-3 | 4.20 | 6.00 | [CAMK2A, FZD1, NFATC2, SERPINF1, SFRP2, SFRP4] |
| GO: 0005214 | Glioma | 5.9E-3 | 6.25 | 4.00 | [CAMK2A, IGF1, PDGFRA, PDGFRB] |
| GO: 0005218 | Melanoma | 7.7E-3 | 5.80 | 4.00 | [FGF7, IGF1, PDGFRA, PDGFRB] |
| GO: 0005414 | Dilated cardiomyopathy | 19.0E-3 | 4.44 | 4.00 | [IGF1, ITGA11, ITGA5, TGFB3] |
| GO: 0004115 | p53 signaling pathway | 43.0E-3 | 4.35 | 3.00 | [IGF1, SERPINE1, THBS1] |