Literature DB >> 29870375

Penalized PET Reconstruction Using Deep Learning Prior and Local Linear Fitting.

Kyungsang Kim, Dufan Wu, Kuang Gong, Joyita Dutta, Jong Hoon Kim, Young Don Son, Hang Keun Kim, Georges El Fakhri, Quanzheng Li.   

Abstract

Motivated by the great potential of deep learning in medical imaging, we propose an iterative positron emission tomography reconstruction framework using a deep learning-based prior. We utilized the denoising convolutional neural network (DnCNN) method and trained the network using full-dose images as the ground truth and low dose images reconstructed from downsampled data by Poisson thinning as input. Since most published deep networks are trained at a predetermined noise level, the noise level disparity of training and testing data is a major problem for their applicability as a generalized prior. In particular, the noise level significantly changes in each iteration, which can potentially degrade the overall performance of iterative reconstruction. Due to insufficient existing studies, we conducted simulations and evaluated the degradation of performance at various noise conditions. Our findings indicated that DnCNN produces additional bias induced by the disparity of noise levels. To address this issue, we propose a local linear fitting function incorporated with the DnCNN prior to improve the image quality by preventing unwanted bias. We demonstrate that the resultant method is robust against noise level disparities despite the network being trained at a predetermined noise level. By means of bias and standard deviation studies via both simulations and clinical experiments, we show that the proposed method outperforms conventional methods based on total variation and non-local means penalties. We thereby confirm that the proposed method improves the reconstruction result both quantitatively and qualitatively.

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Mesh:

Year:  2018        PMID: 29870375      PMCID: PMC6375088          DOI: 10.1109/TMI.2018.2832613

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  14 in total

Review 1.  From PET detectors to PET scanners.

Authors:  John L Humm; Anatoly Rosenfeld; Alberto Del Guerra
Journal:  Eur J Nucl Med Mol Imaging       Date:  2003-10-02       Impact factor: 9.236

2.  Corrections for accidental coincidences and attenuation in maximum-likelihood image reconstruction for positron-emission tomography.

Authors:  D G Politte; D L Snyder
Journal:  IEEE Trans Med Imaging       Date:  1991       Impact factor: 10.048

3.  Sparse-view spectral CT reconstruction using spectral patch-based low-rank penalty.

Authors:  Kyungsang Kim; Jong Chul Ye; William Worstell; Jinsong Ouyang; Yothin Rakvongthai; Georges El Fakhri; Quanzheng Li
Journal:  IEEE Trans Med Imaging       Date:  2014-12-18       Impact factor: 10.048

4.  Dynamic PET reconstruction using temporal patch-based low rank penalty for ROI-based brain kinetic analysis.

Authors:  Kyungsang Kim; Young Don Son; Yoram Bresler; Zang Hee Cho; Jong Beom Ra; Jong Chul Ye
Journal:  Phys Med Biol       Date:  2015-03-07       Impact factor: 3.609

5.  Guided image filtering.

Authors:  Kaiming He; Jian Sun; Xiaoou Tang
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2013-06       Impact factor: 6.226

6.  Ultra-fast hybrid CPU-GPU multiple scatter simulation for 3-D PET.

Authors:  Kyung Sang Kim; Young Don Son; Zang Hee Cho; Jong Beom Ra; Jong Chul Ye
Journal:  IEEE J Biomed Health Inform       Date:  2014-01       Impact factor: 5.772

7.  Ordered subsets algorithms for transmission tomography.

Authors:  H Erdogan; J A Fessler
Journal:  Phys Med Biol       Date:  1999-11       Impact factor: 3.609

8.  Penalized likelihood PET image reconstruction using patch-based edge-preserving regularization.

Authors:  Guobao Wang; Jinyi Qi
Journal:  IEEE Trans Med Imaging       Date:  2012-08-02       Impact factor: 10.048

9.  Serotonin transporter availability in thalamic subregions in schizophrenia: a study using 7.0-T MRI with [(11)C]DASB high-resolution PET.

Authors:  Jong-Hoon Kim; Young-Don Son; Jeong-Hee Kim; Eun-Jung Choi; Sang-Yoon Lee; Jee Eun Lee; Zang-Hee Cho; Young-Bo Kim
Journal:  Psychiatry Res       Date:  2014-11-05       Impact factor: 3.222

10.  Fully 3D iterative scatter-corrected OSEM for HRRT PET using a GPU.

Authors:  Kyung Sang Kim; Jong Chul Ye
Journal:  Phys Med Biol       Date:  2011-07-19       Impact factor: 3.609

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  36 in total

1.  Time of flight PET reconstruction using nonuniform update for regional recovery uniformity.

Authors:  Kyungsang Kim; Donghwan Kim; Jaewon Yang; Georges El Fakhri; Youngho Seo; Jeffrey A Fessler; Quanzheng Li
Journal:  Med Phys       Date:  2019-01-04       Impact factor: 4.071

2.  Artificial intelligence, machine (deep) learning and radio(geno)mics: definitions and nuclear medicine imaging applications.

Authors:  Dimitris Visvikis; Catherine Cheze Le Rest; Vincent Jaouen; Mathieu Hatt
Journal:  Eur J Nucl Med Mol Imaging       Date:  2019-07-06       Impact factor: 9.236

3.  A Learned Reconstruction Network for SPECT Imaging.

Authors:  Wenyi Shao; Martin G Pomper; Yong Du
Journal:  IEEE Trans Radiat Plasma Med Sci       Date:  2020-05-12

Review 4.  Applications of artificial intelligence in nuclear medicine image generation.

Authors:  Zhibiao Cheng; Junhai Wen; Gang Huang; Jianhua Yan
Journal:  Quant Imaging Med Surg       Date:  2021-06

5.  DirectPET: full-size neural network PET reconstruction from sinogram data.

Authors:  William Whiteley; Wing K Luk; Jens Gregor
Journal:  J Med Imaging (Bellingham)       Date:  2020-02-28

6.  Improved Low-Count Quantitative PET Reconstruction With an Iterative Neural Network.

Authors:  Hongki Lim; Il Yong Chun; Yuni K Dewaraja; Jeffrey A Fessler
Journal:  IEEE Trans Med Imaging       Date:  2020-10-28       Impact factor: 10.048

7.  Higher SNR PET image prediction using a deep learning model and MRI image.

Authors:  Chih-Chieh Liu; Jinyi Qi
Journal:  Phys Med Biol       Date:  2019-05-23       Impact factor: 3.609

8.  Development and validation of the Lesion Synthesis Toolbox and the Perception Study Tool for quantifying observer limits of detection of lesions in positron emission tomography.

Authors:  Hanif Gabrani-Juma; Zamzam Al Bimani; Lionel S Zuckier; Ran Klein
Journal:  J Med Imaging (Bellingham)       Date:  2020-04-21

9.  Super-Resolution PET Imaging Using Convolutional Neural Networks.

Authors:  Tzu-An Song; Samadrita Roy Chowdhury; Fan Yang; Joyita Dutta
Journal:  IEEE Trans Comput Imaging       Date:  2020-01-06

Review 10.  Machine learning in quantitative PET: A review of attenuation correction and low-count image reconstruction methods.

Authors:  Tonghe Wang; Yang Lei; Yabo Fu; Walter J Curran; Tian Liu; Jonathon A Nye; Xiaofeng Yang
Journal:  Phys Med       Date:  2020-07-29       Impact factor: 2.685

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