Literature DB >> 29854228

Secondary Use of Patients' Electronic Records (SUPER): An Approach for Meeting Specific Data Needs of Clinical and Translational Researchers.

Evan T Sholle1, Joseph Kabariti1, Stephen B Johnson2,3, John P Leonard4, Jyotishman Pathak2, Vinay I Varughese1, Curtis L Cole1,2,4, Thomas R Campion1,2,3,5.   

Abstract

Academic medical centers commonly approach secondary use of electronic health record (EHR) data by implementing centralized clinical data warehouses (CDWs). However, CDWs require extensive resources to model data dimensions and harmonize clinical terminology, which can hinder effective support of the specific and varied data needs of investigators. We hypothesized that an approach that aggregates raw data from source systems, ignores initial modeling typical of CDWs, and transforms raw data for specific research purposes would meet investigator needs. The approach has successfully enabled multiple tools that provide utility to the institutional research enterprise. To our knowledge, this is the first complete description of a methodology for electronic patient data acquisition and provisioning that ignores data harmonization at the time of initial storage in favor of downstream transformation to address specific research questions and applications.

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Year:  2018        PMID: 29854228      PMCID: PMC5977622     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  15 in total

1.  Validation of a common data model for active safety surveillance research.

Authors:  J Marc Overhage; Patrick B Ryan; Christian G Reich; Abraham G Hartzema; Paul E Stang
Journal:  J Am Med Inform Assoc       Date:  2011-10-28       Impact factor: 4.497

2.  Expressing observations from electronic medical record flowsheets in an i2b2 based clinical data repository to support research and quality improvement.

Authors:  Lemuel R Waitman; Judith J Warren; E LaVerne Manos; Daniel W Connolly
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

3.  STRIDE--An integrated standards-based translational research informatics platform.

Authors:  Henry J Lowe; Todd A Ferris; Penni M Hernandez; Susan C Weber
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

4.  Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.

Authors:  Paul A Harris; Robert Taylor; Robert Thielke; Jonathon Payne; Nathaniel Gonzalez; Jose G Conde
Journal:  J Biomed Inform       Date:  2008-09-30       Impact factor: 6.317

5.  A Dimensional Bus model for integrating clinical and research data.

Authors:  Ted D Wade; Richard C Hum; James R Murphy
Journal:  J Am Med Inform Assoc       Date:  2011-08-19       Impact factor: 4.497

6.  The evolving use of a clinical data repository: facilitating data access within an electronic medical record.

Authors:  Adam B Wilcox; David K Vawdrey; Yueh-Hsia Chen; Bruce Forman; George Hripcsak
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

7.  Managing vocabulary for a centralized clinical system.

Authors:  J J Cimino; S B Johnson; G Hripcsak; C L Hill; P D Clayton
Journal:  Medinfo       Date:  1995

8.  BiologicalNetworks--tools enabling the integration of multi-scale data for the host-pathogen studies.

Authors:  Sergey Kozhenkov; Mayya Sedova; Yulia Dubinina; Amarnath Gupta; Animesh Ray; Julia Ponomarenko; Michael Baitaluk
Journal:  BMC Syst Biol       Date:  2011-01-14

9.  Implementing a Clinical Research Management System: One Institution's Successful Approach Following Previous Failures.

Authors:  Thomas R Campion; Vanessa L Blau; Scott W Brown; Daniel Izcovich; Curtis L Cole
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2014-04-07

10.  Generalizable Middleware to Support Use of REDCap Dynamic Data Pull for Integrating Clinical and Research Data.

Authors:  Thomas R Campion; Evan T Sholle; Marcos A Davila
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2017-07-26
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  31 in total

1.  Design and Implementation of a Secure Computing Environment for Analysis of Sensitive Data at an Academic Medical Center.

Authors:  Peter R Oxley; John Ruffing; Thomas R Campion; Terrie R Wheeler; Curtis L Cole
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

2.  Underserved populations with missing race ethnicity data differ significantly from those with structured race/ethnicity documentation.

Authors:  Evan T Sholle; Laura C Pinheiro; Prakash Adekkanattu; Marcos A Davila; Stephen B Johnson; Jyotishman Pathak; Sanjai Sinha; Cassidie Li; Stasi A Lubansky; Monika M Safford; Thomas R Campion
Journal:  J Am Med Inform Assoc       Date:  2019-08-01       Impact factor: 4.497

3.  A Method for Integrating Healthcare Provider Organization and Research Sponsor Systems and Workflows to Support Large-Scale Studies.

Authors:  Thomas R Campion; Sean T Pompea; Scott P Turner; Evan T Sholle; Curtis L Cole; Rainu Kaushal
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2019-05-06

4.  Reclassification of Ischemic Stroke Etiological Subtypes on the Basis of High-Risk Nonstenosing Carotid Plaque.

Authors:  Hooman Kamel; Babak B Navi; Alexander E Merkler; Hediyeh Baradaran; Iván Díaz; Neal S Parikh; Scott E Kasner; David J Gladstone; Costantino Iadecola; Ajay Gupta
Journal:  Stroke       Date:  2019-12-18       Impact factor: 7.914

5.  Ascertaining Depression Severity by Extracting Patient Health Questionnaire-9 (PHQ-9) Scores from Clinical Notes.

Authors:  Prakash Adekkanattu; Evan T Sholle; Joseph DeFerio; Jyotishman Pathak; Stephen B Johnson; Thomas R Campion
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

6.  Lessons Learned in the Development of a Computable Phenotype for Response in Myeloproliferative Neoplasms.

Authors:  Evan Sholle; Spencer Krichevsky; Joseph Scandura; Claudia Sosner; Thomas R Campion
Journal:  IEEE Int Conf Healthc Inform       Date:  2018-07-26

7.  Implementation of Informatics to Support the NIH All of Us Research Program in a Healthcare Provider Organization.

Authors:  Scott P Turner; Sean T Pompea; Kelly L Williams; David A Kraemer; Evan T Sholle; Cindy Chen; Curtis L Cole; Rainu Kaushal; Thomas R Campion
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2019-05-06

8.  COVID-19 Severity and Outcomes in Patients With Cancer: A Matched Cohort Study.

Authors:  Gagandeep Brar; Laura C Pinheiro; Michael Shusterman; Brandon Swed; Evgeniya Reshetnyak; Orysya Soroka; Frank Chen; Samuel Yamshon; John Vaughn; Peter Martin; Doru Paul; Manuel Hidalgo; Manish A Shah
Journal:  J Clin Oncol       Date:  2020-09-28       Impact factor: 44.544

9.  Brain Imaging of Patients with COVID-19: Findings at an Academic Institution during the Height of the Outbreak in New York City.

Authors:  E Lin; J E Lantos; S B Strauss; C D Phillips; T R Campion; B B Navi; N S Parikh; A E Merkler; S Mir; C Zhang; H Kamel; M Cusick; P Goyal; A Gupta
Journal:  AJNR Am J Neuroradiol       Date:  2020-08-20       Impact factor: 3.825

10.  A Method to Improve Availability and Quality of Patient Race Data in an Electronic Health Record System.

Authors:  Marika M Cusick; Evan T Sholle; Marcos A Davila; Joseph Kabariti; Curtis L Cole; Thomas R Campion
Journal:  Appl Clin Inform       Date:  2020-11-25       Impact factor: 2.342

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