Literature DB >> 29854227

Leveraging Clinical Time-Series Data for Prediction: A Cautionary Tale.

Eli Sherman1, Hitinder Gurm2, Ulysses Balis3, Scott Owens3, Jenna Wiens1.   

Abstract

In healthcare, patient risk stratification models are often learned using time-series data extracted from electronic health records. When extracting data for a clinical prediction task, several formulations exist, depending on how one chooses the time of prediction and the prediction horizon. In this paper, we show how the formulation can greatly impact both model performance and clinical utility. Leveraging a publicly available ICU dataset, we consider two clinical prediction tasks: in-hospital mortality, and hypokalemia. Through these case studies, we demonstrate the necessity of evaluating models using an outcome-independent reference point, since choosing the time of prediction relative to the event can result in unrealistic performance. Further, an outcome-independent scheme outperforms an outcome-dependent scheme on both tasks (In-Hospital Mortality AUROC .882 vs. .831; Serum Potassium: AUROC .829 vs. .740) when evaluated on test sets that mimic real-world use.

Entities:  

Mesh:

Year:  2018        PMID: 29854227      PMCID: PMC5977714     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  23 in total

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Authors:  Chris Paxton; Alexandru Niculescu-Mizil; Suchi Saria
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

2.  Factors contributing to inappropriate ordering of tests in an academic medical department and the effect of an educational feedback strategy.

Authors:  Spiros Miyakis; Georgios Karamanof; Michalis Liontos; Theodore D Mountokalakis
Journal:  Postgrad Med J       Date:  2006-12       Impact factor: 2.401

3.  Doctor AI: Predicting Clinical Events via Recurrent Neural Networks.

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Journal:  JMLR Workshop Conf Proc       Date:  2016-12-10

Review 4.  Risk prediction models for mortality in ambulatory patients with heart failure: a systematic review.

Authors:  Ana C Alba; Thomas Agoritsas; Milosz Jankowski; Delphine Courvoisier; Stephen D Walter; Gordon H Guyatt; Heather J Ross
Journal:  Circ Heart Fail       Date:  2013-07-25       Impact factor: 8.790

5.  How to derive and validate clinical prediction models for use in intensive care medicine.

Authors:  José Labarère; Bertrand Renaud; Renaud Bertrand; Michael J Fine
Journal:  Intensive Care Med       Date:  2014-02-26       Impact factor: 17.440

6.  Early detection of heart failure with varying prediction windows by structured and unstructured data in electronic health records.

Authors:  Yajuan Wang; Kenney Ng; Roy J Byrd; Jianying Hu; Shahram Ebadollahi; Zahra Daar; Christopher deFilippi; Steven R Steinhubl; Walter F Stewart
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2015

7.  Shock Index Values and Trends in Pediatric Sepsis: Predictors or Therapeutic Targets? A Retrospective Observational Study.

Authors:  Samiran Ray; Mirjana Cvetkovic; Joe Brierley; Daniel H Lutman; Nazima Pathan; Padmanabhan Ramnarayan; David P Inwald; Mark J Peters
Journal:  Shock       Date:  2016-09       Impact factor: 3.454

8.  The utility of proadrenomedullin and procalcitonin in comparison to C-reactive protein as predictors of sepsis and bloodstream infections in critically ill patients with cancer*.

Authors:  Labib Debiane; Ray Y Hachem; Iba Al Wohoush; William Shomali; Ramez R Bahu; Ying Jiang; Anne-Marie Chaftari; Joseph Jabbour; Munirah Al Shuaibi; Alexander Hanania; S Egbert Pravinkumar; Philipp Schuetz; Issam Raad
Journal:  Crit Care Med       Date:  2014-12       Impact factor: 7.598

9.  Clostridium difficile--associated disease in a setting of endemicity: identification of novel risk factors.

Authors:  Erik R Dubberke; Kimberly A Reske; Yan Yan; Margaret A Olsen; L Clifford McDonald; Victoria J Fraser
Journal:  Clin Infect Dis       Date:  2007-12-15       Impact factor: 9.079

10.  A targeted real-time early warning score (TREWScore) for septic shock.

Authors:  Katharine E Henry; David N Hager; Peter J Pronovost; Suchi Saria
Journal:  Sci Transl Med       Date:  2015-08-05       Impact factor: 17.956

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  4 in total

1.  Learning Predictive and Interpretable Timeseries Summaries from ICU Data.

Authors:  Nari Johnson; Sonali Parbhoo; Andrew S Ross; Finale Doshi-Velez
Journal:  AMIA Annu Symp Proc       Date:  2022-02-21

2.  Informing antimicrobial management in the context of COVID-19: understanding the longitudinal dynamics of C-reactive protein and procalcitonin.

Authors:  Damien K Ming; Ashleigh C Myall; Bernard Hernandez; Andrea Y Weiße; Robert L Peach; Mauricio Barahona; Timothy M Rawson; Alison H Holmes
Journal:  BMC Infect Dis       Date:  2021-09-08       Impact factor: 3.667

3.  Language models are an effective representation learning technique for electronic health record data.

Authors:  Ethan Steinberg; Ken Jung; Jason A Fries; Conor K Corbin; Stephen R Pfohl; Nigam H Shah
Journal:  J Biomed Inform       Date:  2020-12-05       Impact factor: 6.317

4.  Democratizing EHR analyses with FIDDLE: a flexible data-driven preprocessing pipeline for structured clinical data.

Authors:  Shengpu Tang; Parmida Davarmanesh; Yanmeng Song; Danai Koutra; Michael W Sjoding; Jenna Wiens
Journal:  J Am Med Inform Assoc       Date:  2020-12-09       Impact factor: 4.497

  4 in total

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