Literature DB >> 21589147

5-Chloro-2-hy-droxy-benzaldehyde thio-semicarbazone.

Hadi Kargar, Reza Kia, Mehmet Akkurt, Orhan Büyükgüngör.   

Abstract

In the title compound, C(8)H(8)ClN(3)OS, the whole mol-ecule assumes a planar structure, with an r.m.s. deviation of 0.108 (2) Å, and an intra-molecular O-H⋯N hydrogen bond generates and S(6) and ring motif. In the crystal structure, each of two pairs of inter-molecular N-H⋯S hydrogen bonds connects two mol-ecules, forming inversion dimers with R(2) (2)(8) motifs.

Entities:  

Year:  2010        PMID: 21589147      PMCID: PMC3009088          DOI: 10.1107/S1600536810043448

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities and pharmaceutical properties of thio­semicarbazones and their derivatives, see: Casas et al. (2000 ▶); Ferrari et al. (2000 ▶); Maccioni et al. (2003 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H8ClN3OS M = 229.69 Monoclinic, a = 5.8303 (4) Å b = 23.6579 (17) Å c = 7.5893 (5) Å β = 104.164 (6)° V = 1014.99 (12) Å3 Z = 4 Mo Kα radiation μ = 0.55 mm−1 T = 296 K 0.52 × 0.33 × 0.08 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.763, T max = 0.957 4469 measured reflections 1895 independent reflections 1524 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.120 S = 1.04 1895 reflections 128 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.37 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810043448/is2621sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810043448/is2621Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H8ClN3OSF(000) = 472
Mr = 229.69Dx = 1.503 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8344 reflections
a = 5.8303 (4) Åθ = 1.7–26.2°
b = 23.6579 (17) ŵ = 0.55 mm1
c = 7.5893 (5) ÅT = 296 K
β = 104.164 (6)°Prism, colourless
V = 1014.99 (12) Å30.52 × 0.33 × 0.08 mm
Z = 4
Stoe IPDS II diffractometer1895 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus1524 reflections with I > 2σ(I)
plane graphiteRint = 0.051
Detector resolution: 6.67 pixels mm-1θmax = 25.6°, θmin = 1.7°
ω scansh = −5→7
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)k = −28→26
Tmin = 0.763, Tmax = 0.957l = −9→9
4469 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.044Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0681P)2 + 0.120P] where P = (Fo2 + 2Fc2)/3
1895 reflections(Δ/σ)max < 0.001
128 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.36 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.36123 (17)0.20555 (4)−0.30970 (10)0.0868 (3)
S10.15507 (9)0.01021 (3)0.79551 (8)0.0559 (2)
O10.8537 (3)0.13549 (11)0.4272 (3)0.0750 (8)
N10.4525 (3)0.08332 (9)0.4467 (3)0.0489 (6)
N20.3002 (3)0.05468 (10)0.5260 (3)0.0523 (6)
N30.5874 (3)0.04298 (10)0.7883 (3)0.0524 (7)
C10.4996 (4)0.13306 (11)0.1830 (3)0.0493 (8)
C20.7333 (4)0.15067 (12)0.2573 (4)0.0573 (8)
C30.8480 (5)0.18395 (14)0.1559 (4)0.0687 (10)
C40.7368 (6)0.20095 (13)−0.0164 (4)0.0702 (10)
C50.5049 (5)0.18372 (12)−0.0912 (4)0.0604 (9)
C60.3886 (5)0.15099 (11)0.0062 (3)0.0542 (8)
C70.3665 (4)0.09979 (11)0.2818 (3)0.0507 (8)
C80.3636 (4)0.03756 (11)0.6999 (3)0.0454 (7)
H10.762700.120400.480000.1120*
H20.159600.047400.462600.0630*
H31.003500.195000.205500.0830*
H3A0.687900.057100.734400.0630*
H3B0.632800.032400.899800.0630*
H40.815200.22370−0.082600.0840*
H60.233100.14030−0.045100.0650*
H70.212100.089700.224300.0610*
U11U22U33U12U13U23
Cl10.1118 (7)0.0820 (6)0.0700 (4)0.0054 (5)0.0287 (4)0.0188 (4)
S10.0349 (3)0.0795 (5)0.0526 (3)−0.0048 (3)0.0096 (2)0.0063 (3)
O10.0458 (10)0.0951 (17)0.0791 (12)−0.0077 (10)0.0058 (9)0.0132 (11)
N10.0379 (9)0.0554 (12)0.0544 (10)−0.0011 (8)0.0131 (8)0.0019 (9)
N20.0336 (9)0.0683 (14)0.0529 (10)−0.0059 (9)0.0065 (8)0.0074 (9)
N30.0334 (9)0.0742 (15)0.0485 (10)−0.0031 (9)0.0079 (7)0.0017 (9)
C10.0447 (12)0.0466 (14)0.0597 (13)0.0017 (10)0.0189 (10)−0.0007 (10)
C20.0453 (12)0.0558 (16)0.0729 (15)0.0009 (11)0.0186 (11)0.0020 (12)
C30.0489 (14)0.0623 (18)0.100 (2)−0.0044 (12)0.0281 (14)0.0079 (15)
C40.0725 (17)0.0577 (18)0.0926 (19)0.0020 (14)0.0438 (15)0.0108 (15)
C50.0729 (17)0.0490 (15)0.0653 (14)0.0056 (13)0.0283 (12)0.0030 (11)
C60.0540 (13)0.0505 (15)0.0595 (12)0.0029 (11)0.0168 (10)−0.0014 (11)
C70.0403 (12)0.0544 (15)0.0570 (12)0.0002 (10)0.0111 (10)0.0015 (11)
C80.0344 (10)0.0510 (14)0.0505 (11)0.0009 (9)0.0096 (9)−0.0029 (10)
Cl1—C51.743 (3)C1—C21.404 (4)
S1—C81.690 (2)C1—C61.405 (3)
O1—C21.357 (4)C1—C71.438 (3)
O1—H10.8200C2—C31.383 (4)
N1—N21.368 (3)C3—C41.370 (4)
N1—C71.289 (3)C4—C51.393 (5)
N2—C81.343 (3)C5—C61.361 (4)
N3—C81.319 (3)C3—H30.9300
N2—H20.8600C4—H40.9300
N3—H3A0.8600C6—H60.9300
N3—H3B0.8600C7—H70.9300
Cl1···C5i3.606 (3)C7···C8vi3.598 (4)
S1···N3ii3.387 (2)C7···N3vi3.440 (4)
S1···N2iii3.491 (2)C7···C3ii3.550 (4)
S1···N3iv3.390 (2)C8···C7vi3.598 (4)
S1···H3Aii2.8700C8···C6vii3.530 (3)
S1···H2iii2.7000C8···N1vi3.339 (3)
S1···H3Biv2.5500C3···H7v3.0300
S1···H7iii3.1700C3···H4viii2.9900
O1···N12.681 (3)C7···H3ii3.0500
O1···N2v3.168 (3)C7···H12.4800
O1···H2v2.7100H1···N11.9700
N1···O12.681 (3)H1···C72.4800
N1···N32.693 (3)H1···H3A2.5600
N1···C8vi3.339 (3)H2···O1ii2.7100
N2···O1ii3.168 (3)H2···H72.1500
N2···S1iii3.491 (2)H2···S1iii2.7000
N3···C6vii3.398 (3)H3···C7v3.0500
N3···S1iv3.390 (2)H3A···S1v2.8700
N3···S1v3.387 (2)H3A···N12.3600
N3···N12.693 (3)H3A···H12.5600
N3···C7vi3.440 (4)H3B···S1iv2.5500
N1···H11.9700H4···C3i2.9900
N1···H3A2.3600H6···H72.4000
C3···C7v3.550 (4)H7···C3ii3.0300
C5···Cl1viii3.606 (3)H7···H22.1500
C6···N3ix3.398 (3)H7···H62.4000
C6···C8ix3.530 (3)H7···S1iii3.1700
C2—O1—H1109.00Cl1—C5—C4119.6 (2)
N2—N1—C7115.9 (2)Cl1—C5—C6119.9 (2)
N1—N2—C8122.0 (2)C4—C5—C6120.5 (3)
C8—N2—H2119.00C1—C6—C5121.1 (3)
N1—N2—H2119.00N1—C7—C1122.7 (2)
H3A—N3—H3B120.00N2—C8—N3118.1 (2)
C8—N3—H3A120.00S1—C8—N2118.92 (18)
C8—N3—H3B120.00S1—C8—N3123.01 (18)
C2—C1—C6118.0 (2)C2—C3—H3119.00
C6—C1—C7118.8 (2)C4—C3—H3119.00
C2—C1—C7123.2 (2)C3—C4—H4120.00
O1—C2—C1121.9 (2)C5—C4—H4120.00
C1—C2—C3120.0 (3)C1—C6—H6119.00
O1—C2—C3118.1 (2)C5—C6—H6119.00
C2—C3—C4121.2 (3)N1—C7—H7119.00
C3—C4—C5119.2 (3)C1—C7—H7119.00
C7—N1—N2—C8−176.7 (2)C6—C1—C2—C3−0.9 (4)
N2—N1—C7—C1176.5 (2)C7—C1—C2—O12.5 (4)
N1—N2—C8—S1171.99 (18)O1—C2—C3—C4−179.8 (3)
N1—N2—C8—N3−8.0 (4)C1—C2—C3—C40.9 (5)
C7—C1—C2—C3−178.2 (3)C2—C3—C4—C5−0.8 (5)
C2—C1—C6—C51.0 (4)C3—C4—C5—Cl1179.5 (2)
C7—C1—C6—C5178.3 (3)C3—C4—C5—C60.8 (5)
C2—C1—C7—N1−0.3 (4)Cl1—C5—C6—C1−179.6 (2)
C6—C1—C7—N1−177.6 (2)C4—C5—C6—C1−0.9 (4)
C6—C1—C2—O1179.8 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.821.972.681 (3)144
N2—H2···S1iii0.862.703.491 (2)153
N3—H3A···S1v0.862.873.387 (2)120
N3—H3A···N10.862.362.693 (3)103
N3—H3B···S1iv0.862.553.390 (2)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯S1i0.862.703.491 (2)153
N3—H3A⋯S1ii0.862.873.387 (2)120
N3—H3A⋯N10.862.362.693 (3)103
N3—H3B⋯S1iii0.862.553.390 (2)167

Symmetry codes: (i) ; (ii) ; (iii) .

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