| Literature DB >> 29849957 |
Xin Wang1, Xia-Qing Shi2, Peng-Wei Zeng1, Fong-Ming Mo2, Zi-Hua Chen1.
Abstract
BACKGROUND: Quantitative analyses of circulating cell-free DNA (cfDNA) are suggested to be a promising method for the detection of colorectal cancer, validated clinical relevance of cfDNA has not been published so far. Though some of the inconsistent results were published. This study is the first meta-analysis to systematically evaluate the diagnostic accuracy of circulating cfDNA as non-invasive biomarkers for colorectal cancer.Entities:
Keywords: circulating cell free DNA; colorectal cancer; diagnosis; meta-analysis
Year: 2018 PMID: 29849957 PMCID: PMC5966252 DOI: 10.18632/oncotarget.25314
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Figure 1Flowchart showing selection of studies for inclusion in the meta-analysis
Characteristics of 14 studies for quantitative analysis of circulating cell free DNA in the diagnosis of colorectal cancer
| Study | Country | Year | No. of P/C | Assay method | Tumor stage | Sample | Measuring object | Cut off | TP | FP | FN | TN | Sensitivity (%) | Specificity (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Italy | 2006 | 75/75 | qPCR | Dukes A-D | serum | CFD levels | 12.5 ng/Ml | 61 | 20 | 14 | 55 | 81.3% | 73.3% | |
| USA | 2006 | 32/51 | qPCR | I-IV | serum | CFD levels | stage I/II 1.63 III/IV 1.73 ng/uL | 13 | 5 | 19 | 46 | 41 | 90 | |
| ALU 247/115 | 0.22 ng/uL | 18 | 5 | 14 | 46 | 56 | 90 | |||||||
| Italy | 2009 | 136/55 | qPCR | I-IV | plasma | ALU115 | 4.86 ng/ml | 107 | 8 | 29 | 47 | 78.52 | 86.08 | |
| ALU247 | 3.04ng/ml | 106 | 10 | 30 | 45 | 77.94 | 82.28 | |||||||
| Italy | 2010 | 118/26 | RT-PCR | I-IV | Serum | CFD levels | 37 ng/mL | 98 | 2 | 20 | 24 | 82.9 | 92.3 | |
| Italy | 2011 | 67/35 | qPCR | 0-IV | Plasma | Alu 247 | 2.0 ng/ml | 63 | 0 | 4 | 35 | 94 | 100 | |
| Israel | 2011 | 38/34 | SYBR Gold | I-IV | serum | CFD levels | 841 ng/ml | 16 | 2 | 22 | 32 | 42 | 94 | |
| China | 2012 | 61/92 | bDNA | I-IV | serum | CFD levels | 768.9ng/ml | 43 | 1 | 18 | 91 | 70.5 | 98.9 | |
| China | 2012 | 178/56 | RT-PCR | I-III | plasma | CFD levels | 32.78 ng/ml | 86 | 3 | 92 | 53 | 48.1 | 94.3 | |
| China | 2013 | 31/92 | bDNA | I-IV | serum | Alu-based | 634.9 ng/ml | 20 | 1 | 11 | 91 | 64.5 | 98.9 | |
| Germany | 2014 | 24/24 | RT-PCR | Not given | serum | Alu-based | ALU115: 1.31 | 18 | 7 | 6 | 17 | 75 | 70.8 | |
| ALU247: 1.29 | ||||||||||||||
| China | 2014 | 104/110 | qPCR | I-IV | Serum | ALU115 | 694.0 ng/ml | 72 | 1 | 32 | 109 | 69.23 | 99.09 | |
| ALU247/115 | 0.52 | 76 | 3 | 28 | 107 | 73.08 | 97.27 | |||||||
| Egypt | 2016 | 50/20 | RT-PCR | II-IV | Serum | CFD levels | 3.3ng/μl | 34 | 7 | 16 | 13 | 68 | 65 | |
| ALU 247/115 | 0.41 | 45 | 3 | 5 | 17 | 90 | 85 | |||||||
| Germany | 2017 | 15/38 | Qubit | IV | plasma | CFD levels | 7.21 ng/ml | 14 | 3 | 1 | 35 | 93.3 | 92.1 | |
| China | 2017 | 329/95 | qPCR | I-IV | Serum | CFD levels | 2,700 copies/ml | 272 | 4 | 57 | 91 | 82.7 | 95.8 |
Abbreviations: No. of P/C = number of patients/control; RT/q-PCR = real-time/quantitative PCR; bDNA = branched DNA; TP = true positive; FP = false positive; FN = false negative; TN = true negative. CFD = cell-free DNA.
The Quality Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2)
| Study | Risk of Bias | Applicability Concerns | |||||
|---|---|---|---|---|---|---|---|
| Patient Selection | Index Test | Reference Standard | Flow and Timing | Patient Selection | Index Test | Reference Standard | |
| Flamini, E. 2006 | H | U | U | U | L | L | U |
| Umetani, N. 2006 | L | U | L | H | L | L | L |
| Pucciarelli, S. 2009 | U | U | U | U | U | U | U |
| Danese, E. 2010 | U | U | L | U | L | L | L |
| Agostini, M. 2011 | H | L | L | H | U | L | L |
| Czeiger, D. 2011 | L | L | U | H | L | L | L |
| Zhang, GH. 2012 | U | U | U | U | L | U | L |
| Jiang, WQ. 2012 | H | U | L | U | U | L | L |
| Qi, J. 2013 | L | U | L | L | L | L | L |
| Leszinski, G. 2014 | U | U | U | H | U | U | U |
| Hao, T. B. 2014 | L | U | L | L | L | L | L |
| El-Gayar, D. 2016 | L | L | L | L | L | L | L |
| Berger, A. W. 2017 | L | L | U | L | L | L | L |
| Lan, Y. T. 2017 | L | L | U | L | L | L | U |
Abbreviations: L, low risk; H, high risk; U, unclear risk.
Figure 2Forest plot of the overall pooled
(A) sensitivity; (B) specificity; (C) PLR;(D) NLR; (E) DOR for quantitative analysis of circulating cell free DNA in the diagnosis of colorectal cancer (F). The SROC curve for quantitative analysis of circulating cell free DNA in the diagnosis of colorectal cancer.
Results of the subgroup analyses performed to identify potential sources of heterogeneity
| Variables | No. of data | Sensitivity | Specificity | PLR | NLR | DOR | AUC |
|---|---|---|---|---|---|---|---|
| 18 | 0.735 | 0.918 | 8.295 | 0.300 | 30.783 | 0.8818 | |
| 3 | 0.747 | 0.939 | 9.398 | 0.277 | 37.767 | 0.9275 | |
| 13 | 0.717 | 0.917 | 8.235 | 0.334 | 27.825 | 0.8652 | |
| 6 | 0.705 | 0.977 | 24.618 | 0.312 | 89.386 | 0.9293 | |
| 5 | 0.818 | 0.837 | 5.200 | 0.212 | 25.453 | 0.8688 | |
| 7 | 0.656 | 0.866 | 4.269 | 0.416 | 12.084 | 0.8667 | |
| 5 | 0.707 | 0.900 | 6.868 | 0.214 | 31.501 | 0.9365 | |
| 13 | 0.750 | 0.924 | 8.858 | 0.324 | 29.789 | 0.8581 | |
| 7 | 0.739 | 0.939 | 11.397 | 0.273 | 43.554 | 0.8932 | |
| 11 | 0.726 | 0.898 | 6.390 | 0.319 | 23.910 | 0.8772 |
Results of the meta-regression performed to identify potential sources of heterogeneity
| Variance | Coefficient | Std. Err. | RDOR | [95% CI] | |
|---|---|---|---|---|---|
| Sample | −0.613 | 0.8780 | 0.5029 | 0.54 | (0.07; 3.95) |
| method | 0.482 | 1.3205 | 0.7235 | 1.62 | (0.08; 32.11) |
| object | −0.415 | 0.8626 | 0.6421 | 0.66 | (0.09; 4.65) |
| quality | −1.054 | 0.8773 | 0.2601 | 0.35 | (0.05; 2.54) |
| country | 1.098 | 1.3648 | 0.4420 | 3.00 | (0.14; 65.70) |
| size | −0.315 | 1.2322 | 0.8041 | 0.73 | (0.04; 11.85) |
| year | 0.161 | 0.8811 | 0.8594 | 1.17 | (0.16; 8.62) |
| quality* | −1.376 | 0.4944 | 0.0139 | 0.25 | (0.09; 0.72) |
Abbreviations: Std.Er, standard error; CI, confidence interval. *after processing.
Figure 3The Fagan nomogram for the assessment of clinical utility on circulating cell free DNA
Figure 4The Deeks’ funnel plot for the detection of publication bias of the included studies