Literature DB >> 29785510

Measuring translational diffusion of 15N-enriched biomolecules in complex solutions with a simplified 1H-15N HMQC-filtered BEST sequence.

Shenggen Yao1, Thomas G Meikle2, Ashish Sethi3,4, Frances Separovic3,5, Jeffrey J Babon6,7, David W Keizer3.   

Abstract

Pulsed-field gradient nuclear magnetic resonance has seen an increase in applications spanning a broad range of disciplines where molecular translational diffusion properties are of interest. The current study introduces and experimentally evaluates the measurement of translational diffusion coefficients of 15N-enriched biomolecules using a 1H-15N HMQC-filtered band-selective excitation short transient (BEST) sequence as an alternative to the previously described SOFAST-XSTE sequence. The results demonstrate that accurate translational diffusion coefficients of 15N-labelled peptides and proteins can be obtained using this alternative 1H-15N HMQC-filtered BEST sequence which is implementable on NMR spectrometers equipped with probes fitted with a single-axis field gradient, including most cryoprobes dedicated to bio-NMR. The sequence is of potential use for direct quantification of protein or peptide translational diffusion within complex systems, such as in mixtures of macromolecules, crowded solutions, membrane-mimicking media and in bicontinuous cubic phases, where conventional sequences may not be readily applicable due to the presence of intense signals arising from sources other than the protein or peptide under investigation.

Entities:  

Keywords:  1H-15N HMQC BEST; Complex solutions; Crowded solutions; Detergent micelles; Isotope-filtered; PFG-NMR; Translational diffusion

Mesh:

Substances:

Year:  2018        PMID: 29785510     DOI: 10.1007/s00249-018-1311-5

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  43 in total

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Review 2.  Advances in nuclear magnetic resonance for drug discovery.

Authors:  Laurel O Sillerud; Richard S Larson
Journal:  Methods Mol Biol       Date:  2012

3.  Translational diffusion of macromolecular assemblies measured using transverse-relaxation-optimized pulsed field gradient NMR.

Authors:  Reto Horst; Arthur L Horwich; Kurt Wüthrich
Journal:  J Am Chem Soc       Date:  2011-09-26       Impact factor: 15.419

4.  Effects of proteins on protein diffusion.

Authors:  Yaqiang Wang; Conggang Li; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2010-07-14       Impact factor: 15.419

5.  3D DOSY-TROSY to determine the translational diffusion coefficient of large protein complexes.

Authors:  Tatiana Didenko; Rolf Boelens; Stefan G D Rüdiger
Journal:  Protein Eng Des Sel       Date:  2010-11-08       Impact factor: 1.650

6.  Lipid and water diffusion in bicontinuous cubic phases measured by NMR.

Authors:  P O Eriksson; G Lindblom
Journal:  Biophys J       Date:  1993-01       Impact factor: 4.033

7.  Translational and rotational diffusion of a small globular protein under crowded conditions.

Authors:  Conggang Li; Yaqiang Wang; Gary J Pielak
Journal:  J Phys Chem B       Date:  2009-10-08       Impact factor: 2.991

8.  Characterization of phospholipid mixed micelles by translational diffusion.

Authors:  James J Chou; James L Baber; Ad Bax
Journal:  J Biomol NMR       Date:  2004-07       Impact factor: 2.835

9.  Disordered Protein Diffusion under Crowded Conditions.

Authors:  Yaqiang Wang; Laura A Benton; Vishavpreet Singh; Gary J Pielak
Journal:  J Phys Chem Lett       Date:  2012-09-06       Impact factor: 6.475

10.  NMR analysis of the structure, dynamics, and unique oligomerization properties of the chemokine CCL27.

Authors:  Ariane L Jansma; John P Kirkpatrick; Andro R Hsu; Tracy M Handel; Daniel Nietlispach
Journal:  J Biol Chem       Date:  2010-03-03       Impact factor: 5.157

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  4 in total

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Review 2.  NMR spectroscopy of lipidic cubic phases.

Authors:  Sunnia Rajput; Shenggen Yao; David W Keizer; Marc-Antoine Sani; Frances Separovic
Journal:  Biophys Rev       Date:  2021-11-11

3.  Locking mixed-lineage kinase domain-like protein in its auto-inhibited state prevents necroptosis.

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

Review 4.  NMR measurement of biomolecular translational and rotational motion for evaluating changes of protein oligomeric state in solution.

Authors:  Shenggen Yao; David W Keizer; Jeffrey J Babon; Frances Separovic
Journal:  Eur Biophys J       Date:  2022-04-05       Impact factor: 2.095

  4 in total

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