Literature DB >> 29769402

GTSF-1 is required for formation of a functional RNA-dependent RNA Polymerase complex in Caenorhabditis elegans.

Miguel Vasconcelos Almeida1, Sabrina Dietz2, Stefan Redl1, Emil Karaulanov3, Andrea Hildebrandt4, Christian Renz5, Helle D Ulrich5, Julian König4, Falk Butter2, René F Ketting6.   

Abstract

Argonaute proteins and their associated small RNAs (sRNAs) are evolutionarily conserved regulators of gene expression. Gametocyte-specific factor 1 (Gtsf1) proteins, characterized by two tandem CHHC zinc fingers and an unstructured C-terminal tail, are conserved in animals and have been shown to interact with Piwi clade Argonautes, thereby assisting their activity. We identified the Caenorhabditis elegans Gtsf1 homolog, named it gtsf-1 and characterized it in the context of the sRNA pathways of C. elegans We report that GTSF-1 is not required for Piwi-mediated gene silencing. Instead, gtsf-1 mutants show a striking depletion of 26G-RNAs, a class of endogenous sRNAs, fully phenocopying rrf-3 mutants. We show, both in vivo and in vitro, that GTSF-1 interacts with RRF-3 via its CHHC zinc fingers. Furthermore, we demonstrate that GTSF-1 is required for the assembly of a larger RRF-3 and DCR-1-containing complex (ERIC), thereby allowing for 26G-RNA generation. We propose that GTSF-1 homologs may act to drive the assembly of larger complexes that act in sRNA production and/or in imposing sRNA-mediated silencing activities.
© 2018 The Authors.

Entities:  

Keywords:  zzm321990C. eleganszzm321990; zzm321990GTSFzzm321990; 26G‐RNA; RdRP; piRNA

Mesh:

Substances:

Year:  2018        PMID: 29769402      PMCID: PMC6003641          DOI: 10.15252/embj.201899325

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  63 in total

1.  Maternal piRNAs Are Essential for Germline Development following De Novo Establishment of Endo-siRNAs in Caenorhabditis elegans.

Authors:  Bruno F M de Albuquerque; Maria Placentino; René F Ketting
Journal:  Dev Cell       Date:  2015-08-13       Impact factor: 12.270

2.  In-gel digestion for mass spectrometric characterization of proteins and proteomes.

Authors:  Andrej Shevchenko; Henrik Tomas; Jan Havlis; Jesper V Olsen; Matthias Mann
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  Tissue specificity of Caenorhabditis elegans enhanced RNA interference mutants.

Authors:  Jimmy J Zhuang; Craig P Hunter
Journal:  Genetics       Date:  2011-03-08       Impact factor: 4.562

4.  Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips.

Authors:  Juri Rappsilber; Matthias Mann; Yasushi Ishihama
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

5.  Reader interactome of epigenetic histone marks in birds.

Authors:  Alina Bluhm; Nuria Casas-Vila; Marion Scheibe; Falk Butter
Journal:  Proteomics       Date:  2016-02       Impact factor: 3.984

6.  Differential impact of the HEN1 homolog HENN-1 on 21U and 26G RNAs in the germline of Caenorhabditis elegans.

Authors:  Leonie M Kamminga; Josien C van Wolfswinkel; Maartje J Luteijn; Lucas J T Kaaij; Marloes P Bagijn; Alexandra Sapetschnig; Eric A Miska; Eugene Berezikov; René F Ketting
Journal:  PLoS Genet       Date:  2012-07-19       Impact factor: 5.917

7.  A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality.

Authors:  Bethany A Buckley; Kirk B Burkhart; Sam Guoping Gu; George Spracklin; Aaron Kershner; Heidi Fritz; Judith Kimble; Andrew Fire; Scott Kennedy
Journal:  Nature       Date:  2012-07-18       Impact factor: 49.962

8.  Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Authors:  Weifeng Gu; Masaki Shirayama; Darryl Conte; Jessica Vasale; Pedro J Batista; Julie M Claycomb; James J Moresco; Elaine M Youngman; Jennifer Keys; Matthew J Stoltz; Chun-Chieh G Chen; Daniel A Chaves; Shenghua Duan; Kristin D Kasschau; Noah Fahlgren; John R Yates; Shohei Mitani; James C Carrington; Craig C Mello
Journal:  Mol Cell       Date:  2009-10-01       Impact factor: 17.970

9.  Structural analysis of Stc1 provides insights into the coupling of RNAi and chromatin modification.

Authors:  Chao He; Sreerekha S Pillai; Francesca Taglini; Fudong Li; Ke Ruan; Jiahai Zhang; Jihui Wu; Yunyu Shi; Elizabeth H Bayne
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-23       Impact factor: 11.205

10.  HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment.

Authors:  Dennis Kappei; Falk Butter; Christian Benda; Marion Scheibe; Irena Draškovič; Michelle Stevense; Clara Lopes Novo; Claire Basquin; Masatake Araki; Kimi Araki; Dragomir Blazhev Krastev; Ralf Kittler; Rolf Jessberger; J Arturo Londoño-Vallejo; Matthias Mann; Frank Buchholz
Journal:  EMBO J       Date:  2013-05-17       Impact factor: 11.598

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  9 in total

1.  The Caenorhabditis elegans TDRD5/7-like protein, LOTR-1, interacts with the helicase ZNFX-1 to balance epigenetic signals in the germline.

Authors:  Elisabeth A Marnik; Miguel V Almeida; P Giselle Cipriani; George Chung; Edoardo Caspani; Emil Karaulanov; Hin Hark Gan; John Zinno; Ida J Isolehto; Fridolin Kielisch; Falk Butter; Catherine S Sharp; Roisin M Flanagan; Frederic X Bonnet; Fabio Piano; René F Ketting; Kristin C Gunsalus; Dustin L Updike
Journal:  PLoS Genet       Date:  2022-06-03       Impact factor: 6.020

2.  Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons.

Authors:  Jonathan J Ipsaro; Paul A O'Brien; Shibani Bhattacharya; Arthur G Palmer; Leemor Joshua-Tor
Journal:  Cell Rep       Date:  2021-03-30       Impact factor: 9.423

3.  Gtsf1 is essential for proper female sex determination and transposon silencing in the silkworm, Bombyx mori.

Authors:  Kai Chen; Ye Yu; Dehong Yang; Xu Yang; Linmeng Tang; Yujia Liu; Xingyu Luo; James R Walters; Zulian Liu; Jun Xu; Yongping Huang
Journal:  PLoS Genet       Date:  2020-11-02       Impact factor: 5.917

4.  The double-stranded DNA-binding proteins TEBP-1 and TEBP-2 form a telomeric complex with POT-1.

Authors:  Sabrina Dietz; Miguel Vasconcelos Almeida; Emily Nischwitz; Jan Schreier; Nikenza Viceconte; Albert Fradera-Sola; Christian Renz; Alejandro Ceron-Noriega; Helle D Ulrich; Dennis Kappei; René F Ketting; Falk Butter
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

5.  A dual role of human tRNA methyltransferase hTrmt13 in regulating translation and transcription.

Authors:  Hao Li; Han Dong; Beisi Xu; Qing-Ping Xiong; Cai-Tao Li; Wen-Qing Yang; Jing Li; Zhi-Xuan Huang; Qi-Yu Zeng; En-Duo Wang; Ru-Juan Liu
Journal:  EMBO J       Date:  2021-12-01       Impact factor: 11.598

6.  GTSF1 accelerates target RNA cleavage by PIWI-clade Argonaute proteins.

Authors:  Amena Arif; Shannon Bailey; Natsuko Izumi; Todd A Anzelon; Deniz M Ozata; Cecilia Andersson; Ildar Gainetdinov; Ian J MacRae; Yukihide Tomari; Phillip D Zamore
Journal:  Nature       Date:  2022-06-30       Impact factor: 69.504

7.  Biogenesis of C. elegans spermatogenesis small RNAs is initiated by a zc3h12a-like ribonuclease.

Authors:  Hsin-Yue Tsai; Hsian-Tang Cheng; Yi-Ting Tsai
Journal:  Sci Adv       Date:  2022-08-10       Impact factor: 14.957

8.  Systematic Identification of Housekeeping Genes Possibly Used as References in Caenorhabditis elegans by Large-Scale Data Integration.

Authors:  Jingxin Tao; Youjin Hao; Xudong Li; Huachun Yin; Xiner Nie; Jie Zhang; Boying Xu; Qiao Chen; Bo Li
Journal:  Cells       Date:  2020-03-24       Impact factor: 6.600

Review 9.  Developmental roles and molecular mechanisms of Asterix/GTSF1.

Authors:  Jonathan J Ipsaro; Leemor Joshua-Tor
Journal:  Wiley Interdiscip Rev RNA       Date:  2022-02-02       Impact factor: 9.349

  9 in total

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