| Literature DB >> 29765725 |
Ercan Aydemir1,2, Sevgi Kansiz3, Mustafa Kemal Gumus2, Nikolay Yu Gorobets4,5, Necmi Dege3.
Abstract
The title compound, C19H19N5O2, was prepared by the reaction of 3-amino-5-(pyridin-3-yl)-1,2,4-triazole with acetone and 2-hy-droxy-3-eth-oxy-benzaldehyde. It crystallizes from ethanol in a tetra-gonal space group, with one mol-ecule in the asymmetric unit. The 1,2,4-triazole five-membered ring is planar (maximum deviation = 0.0028 Å). The pyridine and phenyl rings are also planar with maximum deviations of 0.0091 and 0.0094 Å, respectively. In the crystal, N-H⋯N hydrogen bonds link the mol-ecules into supra-molecular chains propagating along the c-axis direction. Hirshfeld surface analysis and two-dimensional fingerprint plots have been used to analyse the inter-molecular inter-actions present in the crystal.Entities:
Keywords: Biginelli condensation; Hirshfeld surfaces; benzoxadiazocine; crystal structure
Year: 2018 PMID: 29765725 PMCID: PMC5947805 DOI: 10.1107/S2056989018002621
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N5—H5 | 0.86 | 2.13 | 2.907 (4) | 149 |
Symmetry code: (i) .
Figure 2A partial view of the crystal packing of the title compound. Dashed lines denote the intermolecular N—H⋯N hydrogen bonds.
Figure 3The Hirshfeld surface of C19H19N5O2 mapped with d norm.
Figure 4d norm mapped on Hirshfeld surfaces to visualize the intermolecular interactions of C19H19N5O2.
Figure 5Fingerprint plot of the title compound.
Figure 6Two-dimensional fingerprint plots with a d norm view of the H⋯H/H⋯H (52.6%), C⋯H/H⋯C (18.9%), N⋯H/H⋯N (16.3%) and O⋯H/H⋯O (7.2%) contacts in the title compound.
Figure 7Synthesis of the title compound.
Experimental details
| Crystal data | |
| Chemical formula | C19H19N5O2 |
|
| 349.39 |
| Crystal system, space group | Tetragonal, |
| Temperature (K) | 293 |
|
| 17.1509 (8), 11.9033 (7) |
|
| 3501.4 (4) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 0.09 |
| Crystal size (mm) | 0.54 × 0.34 × 0.16 |
| Data collection | |
| Diffractometer | Stoe IPDS 2 |
| Absorption correction | Integration ( |
|
| 0.959, 0.984 |
| No. of measured, independent and observed [ | 8018, 3629, 2449 |
|
| 0.053 |
| (sin θ/λ)max (Å−1) | 0.628 |
| Refinement | |
|
| 0.042, 0.088, 0.90 |
| No. of reflections | 3629 |
| No. of parameters | 236 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.15, −0.12 |
| Absolute structure | Refined as an inversion twin. |
| Absolute structure parameter | −3 (2) |
Computer programs: X-AREA and X-RED (Stoe & Cie, 2002 ▸), SHELXL2017 (Sheldrick, 2008 ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C19H19N5O2 | |
| Mo | |
| Tetragonal, | Cell parameters from 8727 reflections |
| θ = 1.7–27.6° | |
| µ = 0.09 mm−1 | |
| Prism, colorless | |
| 0.54 × 0.34 × 0.16 mm |
| Stoe IPDS 2 diffractometer | 3629 independent reflections |
| Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 2449 reflections with |
| Detector resolution: 6.67 pixels mm-1 | |
| rotation method scans | θmax = 26.5°, θmin = 1.7° |
| Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | |
| 8018 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.15 e Å−3 | |
| 3629 reflections | Δρmin = −0.12 e Å−3 |
| 236 parameters | Absolute structure: Refined as an inversion twin. |
| 0 restraints | Absolute structure parameter: −3 (2) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a 2-component inversion twin. |
| C1 | 0.0390 (2) | 0.7259 (2) | 0.4925 (3) | 0.0581 (10) | |
| H1 | −0.014021 | 0.716332 | 0.501878 | 0.070* | |
| C2 | 0.0662 (2) | 0.7372 (2) | 0.3863 (3) | 0.0597 (10) | |
| H2 | 0.032912 | 0.733641 | 0.324888 | 0.072* | |
| C3 | 0.1444 (2) | 0.7541 (2) | 0.3716 (3) | 0.0558 (9) | |
| H3 | 0.164641 | 0.761427 | 0.299904 | 0.067* | |
| C4 | 0.19186 (19) | 0.76002 (19) | 0.4641 (3) | 0.0451 (8) | |
| C5 | 0.1594 (2) | 0.7450 (2) | 0.5683 (3) | 0.0524 (9) | |
| H5 | 0.191757 | 0.746889 | 0.630959 | 0.063* | |
| C6 | 0.27446 (19) | 0.78337 (18) | 0.4538 (3) | 0.0433 (8) | |
| C7 | 0.3820 (2) | 0.81015 (19) | 0.3807 (3) | 0.0452 (8) | |
| C8 | 0.5188 (2) | 0.8326 (2) | 0.3714 (3) | 0.0530 (9) | |
| H8 | 0.557656 | 0.853590 | 0.319160 | 0.064* | |
| C9 | 0.5062 (2) | 0.8898 (2) | 0.4669 (4) | 0.0575 (10) | |
| H9A | 0.555879 | 0.903724 | 0.500282 | 0.069* | |
| H9B | 0.481787 | 0.936913 | 0.438785 | 0.069* | |
| C10 | 0.4545 (2) | 0.85180 (19) | 0.5536 (3) | 0.0484 (8) | |
| C11 | 0.4295 (2) | 0.9041 (2) | 0.6485 (4) | 0.0620 (11) | |
| H11A | 0.401451 | 0.947929 | 0.618728 | 0.093* | |
| H11B | 0.396382 | 0.875548 | 0.698823 | 0.093* | |
| H11C | 0.474656 | 0.922184 | 0.688324 | 0.093* | |
| C12 | 0.53691 (18) | 0.74016 (18) | 0.5322 (3) | 0.0432 (8) | |
| C13 | 0.54834 (18) | 0.75667 (19) | 0.4207 (3) | 0.0460 (8) | |
| C14 | 0.5883 (2) | 0.7029 (2) | 0.3536 (3) | 0.0557 (10) | |
| H14 | 0.596039 | 0.713003 | 0.277630 | 0.067* | |
| C15 | 0.6162 (2) | 0.6352 (2) | 0.4004 (4) | 0.0631 (11) | |
| H15 | 0.642215 | 0.599352 | 0.355389 | 0.076* | |
| C16 | 0.6062 (2) | 0.6195 (2) | 0.5133 (3) | 0.0576 (10) | |
| H16 | 0.625672 | 0.573495 | 0.543568 | 0.069* | |
| C17 | 0.56737 (19) | 0.6719 (2) | 0.5813 (3) | 0.0471 (8) | |
| C18 | 0.5850 (3) | 0.5943 (3) | 0.7453 (4) | 0.0716 (12) | |
| H18A | 0.641332 | 0.593704 | 0.738080 | 0.086* | |
| H18B | 0.564269 | 0.547848 | 0.709738 | 0.086* | |
| C19 | 0.5622 (3) | 0.5965 (3) | 0.8665 (4) | 0.1006 (17) | |
| H19A | 0.582492 | 0.551306 | 0.903941 | 0.151* | |
| H19B | 0.583133 | 0.642681 | 0.900739 | 0.151* | |
| H19C | 0.506407 | 0.597026 | 0.872521 | 0.151* | |
| N1 | 0.08383 (17) | 0.72774 (19) | 0.5838 (3) | 0.0572 (8) | |
| N2 | 0.31602 (16) | 0.80437 (15) | 0.5418 (2) | 0.0458 (7) | |
| N3 | 0.38723 (15) | 0.82148 (16) | 0.4920 (2) | 0.0442 (7) | |
| N4 | 0.31108 (15) | 0.78598 (17) | 0.3519 (2) | 0.0467 (7) | |
| N5 | 0.44380 (16) | 0.82375 (18) | 0.3130 (2) | 0.0542 (8) | |
| H5A | 0.439554 | 0.826988 | 0.241203 | 0.065* | |
| O1 | 0.49588 (12) | 0.78802 (13) | 0.60565 (18) | 0.0468 (6) | |
| O2 | 0.55363 (14) | 0.66252 (14) | 0.6933 (2) | 0.0567 (7) |
| C1 | 0.045 (2) | 0.071 (3) | 0.058 (3) | −0.0032 (17) | −0.0068 (19) | −0.002 (2) |
| C2 | 0.055 (2) | 0.077 (3) | 0.048 (2) | −0.0014 (19) | −0.0144 (18) | −0.001 (2) |
| C3 | 0.055 (2) | 0.070 (2) | 0.042 (2) | 0.0003 (18) | −0.0024 (18) | 0.0043 (18) |
| C4 | 0.0452 (19) | 0.051 (2) | 0.0389 (19) | 0.0027 (15) | −0.0019 (16) | −0.0025 (16) |
| C5 | 0.050 (2) | 0.065 (2) | 0.043 (2) | 0.0048 (17) | −0.0047 (17) | −0.0016 (18) |
| C6 | 0.0474 (19) | 0.0454 (19) | 0.0370 (19) | 0.0039 (14) | −0.0035 (16) | −0.0014 (16) |
| C7 | 0.052 (2) | 0.046 (2) | 0.037 (2) | 0.0000 (16) | −0.0011 (17) | 0.0026 (16) |
| C8 | 0.050 (2) | 0.054 (2) | 0.055 (2) | −0.0108 (17) | −0.0034 (18) | 0.0068 (19) |
| C9 | 0.062 (2) | 0.0416 (19) | 0.069 (3) | −0.0079 (16) | −0.012 (2) | 0.0020 (19) |
| C10 | 0.052 (2) | 0.0433 (18) | 0.050 (2) | 0.0020 (15) | −0.0100 (17) | −0.0025 (17) |
| C11 | 0.070 (3) | 0.051 (2) | 0.064 (3) | 0.0125 (18) | −0.020 (2) | −0.0181 (19) |
| C12 | 0.0350 (17) | 0.0465 (19) | 0.048 (2) | −0.0012 (14) | −0.0029 (15) | −0.0062 (17) |
| C13 | 0.0388 (19) | 0.050 (2) | 0.049 (2) | −0.0059 (15) | −0.0008 (16) | −0.0023 (17) |
| C14 | 0.048 (2) | 0.066 (2) | 0.054 (2) | −0.0040 (18) | 0.0081 (18) | −0.0043 (19) |
| C15 | 0.056 (2) | 0.065 (3) | 0.068 (3) | 0.0102 (19) | 0.014 (2) | −0.013 (2) |
| C16 | 0.048 (2) | 0.056 (2) | 0.069 (3) | 0.0077 (17) | 0.0038 (19) | −0.001 (2) |
| C17 | 0.0395 (19) | 0.048 (2) | 0.053 (2) | 0.0002 (15) | −0.0013 (16) | 0.0001 (17) |
| C18 | 0.070 (3) | 0.072 (3) | 0.073 (3) | 0.020 (2) | −0.002 (2) | 0.020 (2) |
| C19 | 0.101 (4) | 0.119 (4) | 0.082 (3) | 0.032 (3) | 0.009 (3) | 0.039 (3) |
| N1 | 0.0495 (18) | 0.075 (2) | 0.0473 (19) | −0.0042 (15) | −0.0009 (15) | 0.0003 (16) |
| N2 | 0.0471 (17) | 0.0498 (16) | 0.0404 (17) | 0.0034 (12) | −0.0027 (14) | −0.0044 (13) |
| N3 | 0.0414 (16) | 0.0491 (16) | 0.0422 (18) | −0.0011 (12) | −0.0038 (13) | −0.0030 (13) |
| N4 | 0.0436 (17) | 0.0571 (18) | 0.0393 (17) | 0.0005 (14) | −0.0050 (13) | 0.0033 (13) |
| N5 | 0.0486 (18) | 0.073 (2) | 0.0410 (16) | −0.0050 (15) | −0.0034 (14) | 0.0104 (16) |
| O1 | 0.0494 (13) | 0.0459 (13) | 0.0451 (13) | 0.0082 (10) | −0.0054 (11) | −0.0044 (11) |
| O2 | 0.0557 (15) | 0.0585 (16) | 0.0559 (16) | 0.0140 (12) | −0.0017 (13) | 0.0087 (13) |
| C1—N1 | 1.331 (5) | C10—C11 | 1.504 (5) |
| C1—C2 | 1.362 (5) | C11—H11A | 0.9600 |
| C1—H1 | 0.9300 | C11—H11B | 0.9600 |
| C2—C3 | 1.384 (5) | C11—H11C | 0.9600 |
| C2—H2 | 0.9300 | C12—C13 | 1.372 (5) |
| C3—C4 | 1.373 (5) | C12—O1 | 1.390 (4) |
| C3—H3 | 0.9300 | C12—C17 | 1.409 (5) |
| C4—C5 | 1.383 (5) | C13—C14 | 1.399 (5) |
| C4—C6 | 1.477 (4) | C14—C15 | 1.374 (5) |
| C5—N1 | 1.343 (4) | C14—H14 | 0.9300 |
| C5—H5 | 0.9300 | C15—C16 | 1.380 (6) |
| C6—N2 | 1.317 (4) | C15—H15 | 0.9300 |
| C6—N4 | 1.367 (4) | C16—C17 | 1.380 (5) |
| C7—N4 | 1.330 (4) | C16—H16 | 0.9300 |
| C7—N3 | 1.342 (4) | C17—O2 | 1.364 (4) |
| C7—N5 | 1.352 (4) | C18—O2 | 1.428 (4) |
| C8—N5 | 1.469 (4) | C18—C19 | 1.495 (6) |
| C8—C13 | 1.515 (5) | C18—H18A | 0.9700 |
| C8—C9 | 1.517 (5) | C18—H18B | 0.9700 |
| C8—H8 | 0.9800 | C19—H19A | 0.9600 |
| C9—C10 | 1.509 (5) | C19—H19B | 0.9600 |
| C9—H9A | 0.9700 | C19—H19C | 0.9600 |
| C9—H9B | 0.9700 | N2—N3 | 1.389 (4) |
| C10—O1 | 1.443 (4) | N5—H5A | 0.8600 |
| C10—N3 | 1.463 (4) | ||
| N1—C1—C2 | 123.7 (3) | H11A—C11—H11C | 109.5 |
| N1—C1—H1 | 118.1 | H11B—C11—H11C | 109.5 |
| C2—C1—H1 | 118.1 | C13—C12—O1 | 124.0 (3) |
| C1—C2—C3 | 118.7 (4) | C13—C12—C17 | 121.3 (3) |
| C1—C2—H2 | 120.7 | O1—C12—C17 | 114.7 (3) |
| C3—C2—H2 | 120.7 | C12—C13—C14 | 119.1 (3) |
| C4—C3—C2 | 119.2 (3) | C12—C13—C8 | 120.3 (3) |
| C4—C3—H3 | 120.4 | C14—C13—C8 | 120.6 (3) |
| C2—C3—H3 | 120.4 | C15—C14—C13 | 119.7 (4) |
| C3—C4—C5 | 117.8 (3) | C15—C14—H14 | 120.1 |
| C3—C4—C6 | 121.4 (3) | C13—C14—H14 | 120.1 |
| C5—C4—C6 | 120.7 (3) | C14—C15—C16 | 121.1 (4) |
| N1—C5—C4 | 123.5 (3) | C14—C15—H15 | 119.5 |
| N1—C5—H5 | 118.2 | C16—C15—H15 | 119.5 |
| C4—C5—H5 | 118.2 | C17—C16—C15 | 120.3 (4) |
| N2—C6—N4 | 116.6 (3) | C17—C16—H16 | 119.9 |
| N2—C6—C4 | 121.8 (3) | C15—C16—H16 | 119.9 |
| N4—C6—C4 | 121.5 (3) | O2—C17—C16 | 125.5 (3) |
| N4—C7—N3 | 111.2 (3) | O2—C17—C12 | 116.0 (3) |
| N4—C7—N5 | 128.1 (3) | C16—C17—C12 | 118.5 (3) |
| N3—C7—N5 | 120.7 (3) | O2—C18—C19 | 107.4 (4) |
| N5—C8—C13 | 112.8 (3) | O2—C18—H18A | 110.2 |
| N5—C8—C9 | 107.2 (3) | C19—C18—H18A | 110.2 |
| C13—C8—C9 | 108.2 (3) | O2—C18—H18B | 110.2 |
| N5—C8—H8 | 109.5 | C19—C18—H18B | 110.2 |
| C13—C8—H8 | 109.5 | H18A—C18—H18B | 108.5 |
| C9—C8—H8 | 109.5 | C18—C19—H19A | 109.5 |
| C10—C9—C8 | 108.5 (3) | C18—C19—H19B | 109.5 |
| C10—C9—H9A | 110.0 | H19A—C19—H19B | 109.5 |
| C8—C9—H9A | 110.0 | C18—C19—H19C | 109.5 |
| C10—C9—H9B | 110.0 | H19A—C19—H19C | 109.5 |
| C8—C9—H9B | 110.0 | H19B—C19—H19C | 109.5 |
| H9A—C9—H9B | 108.4 | C1—N1—C5 | 116.8 (3) |
| O1—C10—N3 | 109.5 (3) | C6—N2—N3 | 101.2 (3) |
| O1—C10—C11 | 105.7 (3) | C7—N3—N2 | 109.4 (3) |
| N3—C10—C11 | 111.3 (3) | C7—N3—C10 | 126.8 (3) |
| O1—C10—C9 | 109.4 (3) | N2—N3—C10 | 123.7 (3) |
| N3—C10—C9 | 105.9 (3) | C7—N4—C6 | 101.6 (3) |
| C11—C10—C9 | 115.1 (3) | C7—N5—C8 | 115.0 (3) |
| C10—C11—H11A | 109.5 | C7—N5—H5A | 122.5 |
| C10—C11—H11B | 109.5 | C8—N5—H5A | 122.5 |
| H11A—C11—H11B | 109.5 | C12—O1—C10 | 115.3 (2) |
| C10—C11—H11C | 109.5 | C17—O2—C18 | 117.1 (3) |
| N1—C1—C2—C3 | −2.2 (6) | C2—C1—N1—C5 | 2.8 (6) |
| C1—C2—C3—C4 | −0.9 (6) | C4—C5—N1—C1 | −0.4 (5) |
| C2—C3—C4—C5 | 3.0 (5) | N4—C6—N2—N3 | −0.8 (3) |
| C2—C3—C4—C6 | −175.7 (3) | C4—C6—N2—N3 | −179.3 (3) |
| C3—C4—C5—N1 | −2.5 (5) | N4—C7—N3—N2 | −0.2 (4) |
| C6—C4—C5—N1 | 176.2 (3) | N5—C7—N3—N2 | 179.3 (3) |
| C3—C4—C6—N2 | 166.1 (3) | N4—C7—N3—C10 | −176.5 (3) |
| C5—C4—C6—N2 | −12.5 (5) | N5—C7—N3—C10 | 3.0 (5) |
| C3—C4—C6—N4 | −12.4 (5) | C6—N2—N3—C7 | 0.5 (3) |
| C5—C4—C6—N4 | 169.0 (3) | C6—N2—N3—C10 | 177.0 (3) |
| N5—C8—C9—C10 | 68.7 (3) | O1—C10—N3—C7 | −101.2 (4) |
| C13—C8—C9—C10 | −53.3 (4) | C11—C10—N3—C7 | 142.3 (4) |
| C8—C9—C10—O1 | 67.4 (3) | C9—C10—N3—C7 | 16.6 (4) |
| C8—C9—C10—N3 | −50.5 (3) | O1—C10—N3—N2 | 83.0 (4) |
| C8—C9—C10—C11 | −173.8 (3) | C11—C10—N3—N2 | −33.5 (4) |
| O1—C12—C13—C14 | −177.8 (3) | C9—C10—N3—N2 | −159.2 (3) |
| C17—C12—C13—C14 | 2.6 (5) | N3—C7—N4—C6 | −0.2 (4) |
| O1—C12—C13—C8 | 2.9 (5) | N5—C7—N4—C6 | −179.7 (3) |
| C17—C12—C13—C8 | −176.7 (3) | N2—C6—N4—C7 | 0.7 (4) |
| N5—C8—C13—C12 | −98.3 (4) | C4—C6—N4—C7 | 179.2 (3) |
| C9—C8—C13—C12 | 20.1 (4) | N4—C7—N5—C8 | −166.6 (3) |
| N5—C8—C13—C14 | 82.4 (4) | N3—C7—N5—C8 | 14.0 (5) |
| C9—C8—C13—C14 | −159.2 (3) | C13—C8—N5—C7 | 70.4 (4) |
| C12—C13—C14—C15 | −0.7 (5) | C9—C8—N5—C7 | −48.7 (4) |
| C8—C13—C14—C15 | 178.6 (3) | C13—C12—O1—C10 | 9.4 (4) |
| C13—C14—C15—C16 | −0.7 (6) | C17—C12—O1—C10 | −171.0 (3) |
| C14—C15—C16—C17 | 0.3 (6) | N3—C10—O1—C12 | 71.7 (3) |
| C15—C16—C17—O2 | 179.6 (4) | C11—C10—O1—C12 | −168.4 (3) |
| C15—C16—C17—C12 | 1.5 (5) | C9—C10—O1—C12 | −43.9 (4) |
| C13—C12—C17—O2 | 178.7 (3) | C16—C17—O2—C18 | 2.8 (5) |
| O1—C12—C17—O2 | −0.9 (4) | C12—C17—O2—C18 | −179.0 (3) |
| C13—C12—C17—C16 | −3.0 (5) | C19—C18—O2—C17 | −179.6 (4) |
| O1—C12—C17—C16 | 177.4 (3) |
| H··· | ||||
| N5—H5 | 0.86 | 2.13 | 2.907 (4) | 149 |