Literature DB >> 21578280

Ethyl 7-chloro-methyl-5-(2-chloro-phen-yl)-7-hydr-oxy-2-methyl-sulfanyl-4,5,6,7-tetra-hydro-1,2,4-triazolo[1,5-a]pyrimidine-6-carboxyl-ate.

Shao-Wei Huang1.   

Abstract

In the title compound, C(16)H(18)Cl(2)N(4)O(3)S, the five-membered ring is almost planar [maximum deviation = 0.011 (3) Å] and the six-membered ring adopts an envelope conformation. In the crystal structure, N-H⋯N, O-H⋯N and C-H⋯O inter-actions link mol-ecules into a three-dimensional network.

Entities:  

Year:  2009        PMID: 21578280      PMCID: PMC2971018          DOI: 10.1107/S1600536809039373

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to tetra­hydro triazolo[1,5-a]pyrimi­dine derivatives as potential biologically active compounds, see: Pryadeina et al. (2004 ▶). For related structures, see: Chen et al. (2005 ▶); Hu et al. (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C16H18Cl2N4O3S M = 417.30 Triclinic, a = 8.4534 (14) Å b = 10.5082 (17) Å c = 12.0846 (19) Å α = 66.660 (3)° β = 79.519 (3)° γ = 84.795 (3)° V = 969.0 (3) Å3 Z = 2 Mo Kα radiation μ = 0.47 mm−1 T = 292 K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART 4K CCD diffractometer Absorption correction: none 6772 measured reflections 3759 independent reflections 2661 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.141 S = 1.08 3759 reflections 249 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809039373/hb5113sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809039373/hb5113Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18Cl2N4O3SZ = 2
Mr = 417.30F(000) = 432
Triclinic, P1Dx = 1.430 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4534 (14) ÅCell parameters from 2018 reflections
b = 10.5082 (17) Åθ = 2.5–24.1°
c = 12.0846 (19) ŵ = 0.47 mm1
α = 66.660 (3)°T = 292 K
β = 79.519 (3)°Block, colourless
γ = 84.795 (3)°0.30 × 0.20 × 0.10 mm
V = 969.0 (3) Å3
Bruker SMART 4K CCD diffractometer2661 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.025
graphiteθmax = 26.0°, θmin = 1.9°
φ and ω scansh = −10→10
6772 measured reflectionsk = −12→12
3759 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.07P)2] where P = (Fo2 + 2Fc2)/3
3759 reflections(Δ/σ)max = 0.001
249 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.68839 (13)0.60065 (10)0.98954 (7)0.0933 (4)
Cl20.60921 (11)0.36582 (8)0.66235 (7)0.0709 (3)
S11.08176 (11)0.90864 (8)0.17205 (6)0.0681 (3)
C10.6041 (4)0.7582 (3)0.9073 (2)0.0571 (8)
C20.4887 (4)0.8210 (4)0.9701 (3)0.0747 (10)
H20.46010.77821.05430.090*
C30.4181 (4)0.9457 (4)0.9068 (3)0.0775 (11)
H30.34130.98700.94830.093*
C40.4602 (4)1.0087 (3)0.7840 (3)0.0684 (9)
H40.41261.09330.74150.082*
C50.5738 (3)0.9472 (3)0.7221 (2)0.0510 (7)
H50.60180.99190.63800.061*
C60.6471 (3)0.8217 (3)0.7812 (2)0.0414 (6)
C70.7640 (3)0.7517 (2)0.7107 (2)0.0382 (6)
H70.835 (3)0.694 (3)0.758 (2)0.046*
C80.6777 (3)0.6492 (2)0.6789 (2)0.0351 (5)
H80.645 (3)0.574 (2)0.755 (2)0.042*
C90.5292 (3)0.7157 (3)0.6256 (2)0.0441 (6)
C100.2503 (4)0.7571 (4)0.6852 (3)0.0809 (11)
H10A0.19550.71900.64170.097*
H10B0.27090.85410.63490.097*
C110.1517 (4)0.7428 (4)0.8024 (3)0.0821 (11)
H11A0.11880.64840.84610.123*
H11B0.05820.80250.78810.123*
H11C0.21330.76800.84960.123*
C120.7963 (3)0.5897 (2)0.5979 (2)0.0369 (6)
C130.7175 (3)0.5062 (3)0.5449 (2)0.0461 (6)
H13A0.79980.47090.49640.055*
H13B0.64490.56620.49160.055*
C140.8996 (3)0.8292 (2)0.5003 (2)0.0395 (6)
C150.9936 (3)0.8369 (3)0.3248 (2)0.0441 (6)
C161.0255 (5)0.7895 (3)0.1151 (3)0.0830 (11)
H16A1.08320.70330.14770.125*
H16B1.05100.82710.02760.125*
H16C0.91190.77400.13920.125*
N10.8465 (3)0.8568 (2)0.59986 (19)0.0461 (6)
H10.894 (3)0.929 (3)0.608 (2)0.055*
N20.8708 (3)0.7083 (2)0.49519 (17)0.0410 (5)
N30.9342 (3)0.7110 (2)0.37947 (17)0.0417 (5)
N40.9794 (3)0.9135 (2)0.39433 (17)0.0441 (5)
O10.5267 (3)0.7939 (2)0.52207 (17)0.0682 (6)
O20.4005 (2)0.6814 (2)0.71234 (18)0.0611 (6)
O30.9120 (2)0.51348 (18)0.66938 (16)0.0448 (5)
H3A0.953 (4)0.458 (3)0.647 (3)0.067*
U11U22U33U12U13U23
Cl10.1212 (8)0.0852 (7)0.0451 (5)−0.0024 (6)−0.0173 (5)0.0064 (4)
Cl20.0932 (6)0.0500 (5)0.0662 (5)−0.0327 (4)−0.0159 (4)−0.0111 (4)
S10.1055 (7)0.0475 (5)0.0361 (4)−0.0024 (4)0.0124 (4)−0.0101 (3)
C10.073 (2)0.0615 (19)0.0356 (14)−0.0172 (16)0.0008 (14)−0.0183 (13)
C20.084 (2)0.101 (3)0.0403 (16)−0.028 (2)0.0177 (16)−0.0353 (18)
C30.078 (2)0.087 (3)0.081 (2)−0.019 (2)0.020 (2)−0.056 (2)
C40.068 (2)0.0568 (19)0.084 (2)−0.0057 (16)0.0090 (18)−0.0391 (17)
C50.0643 (18)0.0407 (16)0.0465 (15)−0.0049 (14)0.0028 (13)−0.0194 (12)
C60.0477 (15)0.0436 (15)0.0343 (13)−0.0110 (12)0.0024 (11)−0.0184 (11)
C70.0433 (15)0.0344 (13)0.0332 (12)−0.0019 (11)−0.0027 (11)−0.0104 (10)
C80.0390 (14)0.0291 (12)0.0315 (12)−0.0017 (10)−0.0041 (10)−0.0063 (10)
C90.0513 (16)0.0398 (15)0.0434 (15)0.0048 (12)−0.0119 (13)−0.0179 (12)
C100.052 (2)0.107 (3)0.089 (3)0.030 (2)−0.0287 (18)−0.043 (2)
C110.051 (2)0.096 (3)0.109 (3)0.0175 (19)−0.021 (2)−0.051 (2)
C120.0450 (14)0.0256 (12)0.0385 (13)−0.0016 (10)−0.0073 (11)−0.0102 (10)
C130.0582 (17)0.0355 (14)0.0434 (14)−0.0058 (12)−0.0109 (12)−0.0117 (11)
C140.0477 (15)0.0316 (13)0.0369 (13)−0.0033 (11)0.0007 (11)−0.0136 (10)
C150.0556 (16)0.0331 (14)0.0355 (13)0.0054 (12)0.0031 (11)−0.0107 (11)
C160.141 (3)0.067 (2)0.0378 (16)0.008 (2)−0.0113 (18)−0.0201 (15)
N10.0583 (14)0.0386 (12)0.0421 (12)−0.0177 (11)0.0107 (10)−0.0208 (10)
N20.0537 (13)0.0327 (11)0.0351 (11)−0.0054 (10)0.0035 (9)−0.0150 (8)
N30.0580 (14)0.0316 (11)0.0339 (11)0.0016 (10)−0.0019 (9)−0.0138 (9)
N40.0567 (14)0.0328 (11)0.0374 (11)−0.0029 (10)0.0074 (10)−0.0137 (9)
O10.0783 (15)0.0711 (14)0.0463 (12)0.0242 (12)−0.0219 (10)−0.0138 (10)
O20.0390 (11)0.0711 (14)0.0615 (12)0.0076 (10)−0.0113 (9)−0.0140 (10)
O30.0513 (11)0.0359 (10)0.0513 (11)0.0109 (8)−0.0149 (9)−0.0207 (8)
Cl1—C11.725 (3)C10—O21.454 (3)
Cl2—C131.773 (2)C10—C111.465 (5)
S1—C151.740 (2)C10—H10A0.9700
S1—C161.783 (4)C10—H10B0.9700
C1—C61.392 (3)C11—H11A0.9600
C1—C21.404 (4)C11—H11B0.9600
C2—C31.374 (5)C11—H11C0.9600
C2—H20.9300C12—O31.401 (3)
C3—C41.356 (4)C12—N21.456 (3)
C3—H30.9300C12—C131.526 (3)
C4—C51.381 (4)C13—H13A0.9700
C4—H40.9300C13—H13B0.9700
C5—C61.378 (4)C14—N41.332 (3)
C5—H50.9300C14—N11.337 (3)
C6—C71.517 (4)C14—N21.342 (3)
C7—N11.458 (3)C15—N31.321 (3)
C7—C81.554 (3)C15—N41.360 (3)
C7—H70.92 (3)C16—H16A0.9600
C8—C91.502 (3)C16—H16B0.9600
C8—C121.539 (3)C16—H16C0.9600
C8—H80.96 (2)N1—H10.93 (3)
C9—O11.198 (3)N2—N31.393 (3)
C9—O21.329 (3)O3—H3A0.77 (3)
C15—S1—C16101.76 (14)C10—C11—H11A109.5
C6—C1—C2120.3 (3)C10—C11—H11B109.5
C6—C1—Cl1121.1 (2)H11A—C11—H11B109.5
C2—C1—Cl1118.6 (2)C10—C11—H11C109.5
C3—C2—C1119.9 (3)H11A—C11—H11C109.5
C3—C2—H2120.0H11B—C11—H11C109.5
C1—C2—H2120.0O3—C12—N2109.8 (2)
C4—C3—C2120.2 (3)O3—C12—C13113.3 (2)
C4—C3—H3119.9N2—C12—C13107.02 (19)
C2—C3—H3119.9O3—C12—C8105.82 (18)
C3—C4—C5120.0 (3)N2—C12—C8106.35 (18)
C3—C4—H4120.0C13—C12—C8114.3 (2)
C5—C4—H4120.0C12—C13—Cl2111.07 (17)
C6—C5—C4122.1 (3)C12—C13—H13A109.4
C6—C5—H5119.0Cl2—C13—H13A109.4
C4—C5—H5119.0C12—C13—H13B109.4
C5—C6—C1117.5 (2)Cl2—C13—H13B109.4
C5—C6—C7121.2 (2)H13A—C13—H13B108.0
C1—C6—C7121.2 (2)N4—C14—N1127.2 (2)
N1—C7—C6109.5 (2)N4—C14—N2110.8 (2)
N1—C7—C8110.5 (2)N1—C14—N2121.9 (2)
C6—C7—C8111.7 (2)N3—C15—N4116.1 (2)
N1—C7—H7112.1 (16)N3—C15—S1124.2 (2)
C6—C7—H7111.0 (16)N4—C15—S1119.66 (19)
C8—C7—H7101.9 (16)S1—C16—H16A109.5
C9—C8—C12113.9 (2)S1—C16—H16B109.5
C9—C8—C7110.8 (2)H16A—C16—H16B109.5
C12—C8—C7110.40 (19)S1—C16—H16C109.5
C9—C8—H8108.1 (15)H16A—C16—H16C109.5
C12—C8—H8107.5 (14)H16B—C16—H16C109.5
C7—C8—H8105.7 (14)C14—N1—C7120.7 (2)
O1—C9—O2124.5 (3)C14—N1—H1118.2 (17)
O1—C9—C8125.5 (3)C7—N1—H1117.4 (16)
O2—C9—C8109.9 (2)C14—N2—N3109.23 (18)
O2—C10—C11107.0 (3)C14—N2—C12124.9 (2)
O2—C10—H10A110.3N3—N2—C12125.74 (19)
C11—C10—H10A110.3C15—N3—N2101.43 (19)
O2—C10—H10B110.3C14—N4—C15102.3 (2)
C11—C10—H10B110.3C9—O2—C10118.2 (2)
H10A—C10—H10B108.6C12—O3—H3A111 (2)
C6—C1—C2—C3−0.1 (5)N2—C12—C13—Cl2−175.47 (17)
Cl1—C1—C2—C3−179.3 (3)C8—C12—C13—Cl2−58.0 (2)
C1—C2—C3—C4−0.4 (5)C16—S1—C15—N312.5 (3)
C2—C3—C4—C50.3 (5)C16—S1—C15—N4−165.8 (2)
C3—C4—C5—C60.3 (5)N4—C14—N1—C7−178.5 (2)
C4—C5—C6—C1−0.7 (4)N2—C14—N1—C74.3 (4)
C4—C5—C6—C7176.2 (3)C6—C7—N1—C14−151.3 (2)
C2—C1—C6—C50.6 (4)C8—C7—N1—C14−27.9 (3)
Cl1—C1—C6—C5179.8 (2)N4—C14—N2—N3−0.1 (3)
C2—C1—C6—C7−176.3 (3)N1—C14—N2—N3177.5 (2)
Cl1—C1—C6—C72.8 (4)N4—C14—N2—C12175.4 (2)
C5—C6—C7—N130.3 (3)N1—C14—N2—C12−7.0 (4)
C1—C6—C7—N1−152.8 (2)O3—C12—N2—C14−82.2 (3)
C5—C6—C7—C8−92.4 (3)C13—C12—N2—C14154.4 (2)
C1—C6—C7—C884.5 (3)C8—C12—N2—C1431.9 (3)
N1—C7—C8—C9−74.3 (3)O3—C12—N2—N392.6 (3)
C6—C7—C8—C947.9 (3)C13—C12—N2—N3−30.8 (3)
N1—C7—C8—C1252.8 (3)C8—C12—N2—N3−153.3 (2)
C6—C7—C8—C12175.02 (19)N4—C15—N3—N21.9 (3)
C12—C8—C9—O1−45.3 (3)S1—C15—N3—N2−176.39 (19)
C7—C8—C9—O179.9 (3)C14—N2—N3—C15−1.1 (3)
C12—C8—C9—O2138.4 (2)C12—N2—N3—C15−176.5 (2)
C7—C8—C9—O2−96.4 (2)N1—C14—N4—C15−176.3 (3)
C9—C8—C12—O3−170.66 (19)N2—C14—N4—C151.2 (3)
C7—C8—C12—O364.0 (2)N3—C15—N4—C14−2.0 (3)
C9—C8—C12—N272.6 (2)S1—C15—N4—C14176.38 (19)
C7—C8—C12—N2−52.8 (2)O1—C9—O2—C10−8.7 (4)
C9—C8—C12—C13−45.3 (3)C8—C9—O2—C10167.6 (3)
C7—C8—C12—C13−170.64 (19)C11—C10—O2—C9−157.3 (3)
O3—C12—C13—Cl263.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···N4i0.93 (3)2.04 (3)2.969 (3)172 (2)
O3—H3A···N3ii0.77 (3)2.05 (3)2.806 (3)170 (3)
C16—H16A···O3ii0.962.473.290 (4)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N4i0.93 (3)2.04 (3)2.969 (3)172 (2)
O3—H3A⋯N3ii0.77 (3)2.05 (3)2.806 (3)170 (3)
C16—H16A⋯O3ii0.962.473.290 (4)143

Symmetry codes: (i) ; (ii) .

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2.  Crystal structure and Hirshfeld surface analysis of 7-eth-oxy-5-methyl-2-(pyridin-3-yl)-11,12-di-hydro-5,11-methano-[1,2,4]triazolo[1,5-c][1,3,5]benzoxadiazo-cine.

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3.  Hirshfeld surface analysis and crystal structure of 7-meth-oxy-5-methyl-2-phenyl-11,12-di-hydro-5,11-methano-1,2,4-triazolo[1,5-c][1,3,5]benzoxadiazo-cine.

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