Literature DB >> 29754221

Negative Regulation Gene Circuits for Efflux Pump Control.

Daniel A Charlebois1, Junchen Diao2, Dmitry Nevozhay2,3, Gábor Balázsi4,5.   

Abstract

Synthetic biologists aim to design biological systems for a variety of industrial and medical applications, ranging from biofuel to drug production. Synthetic gene circuits regulating efflux pump protein expression can achieve this by driving desired substrates such as biofuels, pharmaceuticals, or other chemicals out of the cell in a precisely controlled manner. However, efflux pumps may introduce implicit negative feedback by pumping out intracellular inducer molecules that control gene circuits, which then can alter gene circuit function. Therefore, synthetic gene circuits must be carefully designed and constructed for precise efflux control. Here, we provide protocols for quantitatively modeling and building synthetic gene constructs for efflux pump regulation.

Entities:  

Keywords:  Efflux pump; Feedback; Mathematical modeling; Synthetic gene circuit

Mesh:

Substances:

Year:  2018        PMID: 29754221      PMCID: PMC6934251          DOI: 10.1007/978-1-4939-7795-6_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  24 in total

1.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

3.  Dizzy: stochastic simulation of large-scale genetic regulatory networks.

Authors:  Stephen Ramsey; David Orrell; Hamid Bolouri
Journal:  J Bioinform Comput Biol       Date:  2005-04       Impact factor: 1.122

Review 4.  Stochasticity in gene expression: from theories to phenotypes.

Authors:  Mads Kaern; Timothy C Elston; William J Blake; James J Collins
Journal:  Nat Rev Genet       Date:  2005-06       Impact factor: 53.242

Review 5.  The second wave of synthetic biology: from modules to systems.

Authors:  Priscilla E M Purnick; Ron Weiss
Journal:  Nat Rev Mol Cell Biol       Date:  2009-06       Impact factor: 94.444

6.  Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression.

Authors:  Dmitry Nevozhay; Rhys M Adams; Kevin F Murphy; Kresimir Josic; Gábor Balázsi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-11       Impact factor: 11.205

7.  Linearizer gene circuits with negative feedback regulation.

Authors:  Dmitry Nevozhay; Rhys M Adams; Gábor Balázsi
Journal:  Methods Mol Biol       Date:  2011

Review 8.  ABC-transporters: implications on drug resistance from microorganisms to human cancers.

Authors:  Hermann Lage
Journal:  Int J Antimicrob Agents       Date:  2003-09       Impact factor: 5.283

9.  Mapping the environmental fitness landscape of a synthetic gene circuit.

Authors:  Dmitry Nevozhay; Rhys M Adams; Elizabeth Van Itallie; Matthew R Bennett; Gábor Balázsi
Journal:  PLoS Comput Biol       Date:  2012-04-12       Impact factor: 4.475

10.  Environmental signal integration by a modular AND gate.

Authors:  J Christopher Anderson; Christopher A Voigt; Adam P Arkin
Journal:  Mol Syst Biol       Date:  2007-08-14       Impact factor: 11.429

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  1 in total

1.  Noise-reducing optogenetic negative-feedback gene circuits in human cells.

Authors:  Michael Tyler Guinn; Gábor Balázsi
Journal:  Nucleic Acids Res       Date:  2019-08-22       Impact factor: 16.971

  1 in total

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