Literature DB >> 29743480

Femtosecond X-ray coherent diffraction of aligned amyloid fibrils on low background graphene.

Carolin Seuring1,2, Kartik Ayyer3, Eleftheria Filippaki3, Miriam Barthelmess3, Jean-Nicolas Longchamp4, Philippe Ringler5, Tommaso Pardini6, David H Wojtas7, Matthew A Coleman6, Katerina Dörner3, Silje Fuglerud3, Greger Hammarin8, Birgit Habenstein9, Annette E Langkilde10, Antoine Loquet9, Alke Meents3, Roland Riek11, Henning Stahlberg5, Sébastien Boutet12, Mark S Hunter12, Jason Koglin12, Mengning Liang12, Helen M Ginn13,14, Rick P Millane7, Matthias Frank6, Anton Barty3, Henry N Chapman3,15,16.   

Abstract

Here we present a new approach to diffraction imaging of amyloid fibrils, combining a free-standing graphene support and single nanofocused X-ray pulses of femtosecond duration from an X-ray free-electron laser. Due to the very low background scattering from the graphene support and mutual alignment of filaments, diffraction from tobacco mosaic virus (TMV) filaments and amyloid protofibrils is obtained to 2.7 Å and 2.4 Å resolution in single diffraction patterns, respectively. Some TMV diffraction patterns exhibit asymmetry that indicates the presence of a limited number of axial rotations in the XFEL focus. Signal-to-noise levels from individual diffraction patterns are enhanced using computational alignment and merging, giving patterns that are superior to those obtainable from synchrotron radiation sources. We anticipate that our approach will be a starting point for further investigations into unsolved structures of filaments and other weakly scattering objects.

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Year:  2018        PMID: 29743480      PMCID: PMC5943278          DOI: 10.1038/s41467-018-04116-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  52 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

3.  Natural and synthetic prion structure from X-ray fiber diffraction.

Authors:  Holger Wille; Wen Bian; Michele McDonald; Amy Kendall; David W Colby; Lillian Bloch; Julian Ollesch; Alexander L Borovinskiy; Fred E Cohen; Stanley B Prusiner; Gerald Stubbs
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-28       Impact factor: 11.205

4.  Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

Authors:  M Sunde; L C Serpell; M Bartlam; P E Fraser; M B Pepys; C C Blake
Journal:  J Mol Biol       Date:  1997-10-31       Impact factor: 5.469

Review 5.  The structure of fibrils from 'misfolded' proteins.

Authors:  Beat H Meier; Anja Böckmann
Journal:  Curr Opin Struct Biol       Date:  2014-12-24       Impact factor: 6.809

6.  Low-energy electron holographic imaging of gold nanorods supported by ultraclean graphene.

Authors:  Jean-Nicolas Longchamp; Conrad Escher; Tatiana Latychevskaia; Hans-Werner Fink
Journal:  Ultramicroscopy       Date:  2014-01-24       Impact factor: 2.689

7.  Functional amyloids as natural storage of peptide hormones in pituitary secretory granules.

Authors:  Samir K Maji; Marilyn H Perrin; Michael R Sawaya; Sebastian Jessberger; Krishna Vadodaria; Robert A Rissman; Praful S Singru; K Peter R Nilsson; Rozalyn Simon; David Schubert; David Eisenberg; Jean Rivier; Paul Sawchenko; Wylie Vale; Roland Riek
Journal:  Science       Date:  2009-06-18       Impact factor: 47.728

8.  The Coherent X-ray Imaging instrument at the Linac Coherent Light Source.

Authors:  Mengning Liang; Garth J Williams; Marc Messerschmidt; M Marvin Seibert; Paul A Montanez; Matt Hayes; Despina Milathianaki; Andrew Aquila; Mark S Hunter; Jason E Koglin; Donald W Schafer; Serge Guillet; Armin Busse; Robert Bergan; William Olson; Kay Fox; Nathaniel Stewart; Robin Curtis; Alireza Alan Miahnahri; Sébastien Boutet
Journal:  J Synchrotron Radiat       Date:  2015-04-15       Impact factor: 2.616

9.  Fixed-target protein serial microcrystallography with an x-ray free electron laser.

Authors:  Mark S Hunter; Brent Segelke; Marc Messerschmidt; Garth J Williams; Nadia A Zatsepin; Anton Barty; W Henry Benner; David B Carlson; Matthew Coleman; Alexander Graf; Stefan P Hau-Riege; Tommaso Pardini; M Marvin Seibert; James Evans; Sébastien Boutet; Matthias Frank
Journal:  Sci Rep       Date:  2014-08-12       Impact factor: 4.379

10.  Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser.

Authors:  Tomas Ekeberg; Martin Svenda; M Marvin Seibert; Chantal Abergel; Filipe R N C Maia; Virginie Seltzer; Daniel P DePonte; Andrew Aquila; Jakob Andreasson; Bianca Iwan; Olof Jönsson; Daniel Westphal; Duško Odić; Inger Andersson; Anton Barty; Meng Liang; Andrew V Martin; Lars Gumprecht; Holger Fleckenstein; Saša Bajt; Miriam Barthelmess; Nicola Coppola; Jean-Michel Claverie; N Duane Loh; Christoph Bostedt; John D Bozek; Jacek Krzywinski; Marc Messerschmidt; Michael J Bogan; Christina Y Hampton; Raymond G Sierra; Matthias Frank; Robert L Shoeman; Lukas Lomb; Lutz Foucar; Sascha W Epp; Daniel Rolles; Artem Rudenko; Robert Hartmann; Andreas Hartmann; Nils Kimmel; Peter Holl; Georg Weidenspointner; Benedikt Rudek; Benjamin Erk; Stephan Kassemeyer; Ilme Schlichting; Lothar Strüder; Joachim Ullrich; Carlo Schmidt; Faton Krasniqi; Günter Hauser; Christian Reich; Heike Soltau; Sebastian Schorb; Helmut Hirsemann; Cornelia Wunderer; Heinz Graafsma; Henry Chapman; Janos Hajdu
Journal:  Sci Data       Date:  2016-08-01       Impact factor: 6.444

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  7 in total

1.  Imaging electron-density fluctuations by multidimensional X-ray photon-coincidence diffraction.

Authors:  Lyuzhou Ye; Jérémy R Rouxel; Daeheum Cho; Shaul Mukamel
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-24       Impact factor: 11.205

Review 2.  An outlook on using serial femtosecond crystallography in drug discovery.

Authors:  Alexey Mishin; Anastasiia Gusach; Aleksandra Luginina; Egor Marin; Valentin Borshchevskiy; Vadim Cherezov
Journal:  Expert Opin Drug Discov       Date:  2019-06-11       Impact factor: 6.098

3.  Hierarchical Ordered Assembly of Genetically Modifiable Viruses into Nanoridge-in-Microridge Structures.

Authors:  Ningyun Zhou; Yan Li; Christian H Loveland; Megan J Wilson; Binrui Cao; Penghe Qiu; Mingying Yang; Chuanbin Mao
Journal:  Adv Mater       Date:  2019-11-18       Impact factor: 30.849

4.  Plug-and-play polymer microfluidic chips for hydrated, room temperature, fixed-target serial crystallography.

Authors:  Deepshika Gilbile; Megan L Shelby; Artem Y Lyubimov; Jennifer L Wierman; Diana C F Monteiro; Aina E Cohen; Silvia Russi; Matthew A Coleman; Matthias Frank; Tonya L Kuhl
Journal:  Lab Chip       Date:  2021-12-07       Impact factor: 7.517

5.  Ab initio reconstruction from one-dimensional crystal diffraction data.

Authors:  Romain D Arnal; Rick P Millane
Journal:  Acta Crystallogr A Found Adv       Date:  2022-04-05       Impact factor: 2.331

6.  Biological single-particle imaging using XFELs - towards the next resolution revolution.

Authors:  Dominik Oberthür
Journal:  IUCrJ       Date:  2018-10-31       Impact factor: 4.769

7.  A fixed-target platform for serial femtosecond crystallography in a hydrated environment.

Authors:  M L Shelby; D Gilbile; T D Grant; C Seuring; B W Segelke; W He; A C Evans; T Pakendorf; P Fischer; M S Hunter; A Batyuk; M Barthelmess; A Meents; M A Coleman; T L Kuhl; M Frank
Journal:  IUCrJ       Date:  2020-01-01       Impact factor: 4.769

  7 in total

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