Literature DB >> 29717540

BrainMap VBM: An environment for structural meta-analysis.

Thomas J Vanasse1,2, P Mickle Fox1, Daniel S Barron3, Michaela Robertson1, Simon B Eickhoff4,5, Jack L Lancaster1,2, Peter T Fox1,2,6,7.   

Abstract

The BrainMap database is a community resource that curates peer-reviewed, coordinate-based human neuroimaging literature. By pairing the results of neuroimaging studies with their relevant meta-data, BrainMap facilitates coordinate-based meta-analysis (CBMA) of the neuroimaging literature en masse or at the level of experimental paradigm, clinical disease, or anatomic location. Initially dedicated to the functional, task-activation literature, BrainMap is now expanding to include voxel-based morphometry (VBM) studies in a separate sector, titled: BrainMap VBM. VBM is a whole-brain, voxel-wise method that measures significant structural differences between or within groups which are reported as standardized, peak x-y-z coordinates. Here we describe BrainMap VBM, including the meta-data structure, current data volume, and automated reverse inference functions (region-to-disease profile) of this new community resource. CBMA offers a robust methodology for retaining true-positive and excluding false-positive findings across studies in the VBM literature. As with BrainMap's functional database, BrainMap VBM may be synthesized en masse or at the level of clinical disease or anatomic location. As a use-case scenario for BrainMap VBM, we illustrate a trans-diagnostic data-mining procedure wherein we explore the underlying network structure of 2,002 experiments representing over 53,000 subjects through independent components analysis (ICA). To reduce data-redundancy effects inherent to any database, we demonstrate two data-filtering approaches that proved helpful to ICA. Finally, we apply hierarchical clustering analysis (HCA) to measure network- and disease-specificity. This procedure distinguished psychiatric from neurological diseases. We invite the neuroscientific community to further exploit BrainMap VBM with other modeling approaches.
© 2018 Wiley Periodicals, Inc.

Entities:  

Keywords:  atrophy; data-mining; independent components analysis; networks; pattern analysis; structural covariance; structural magnetic resonance imaging; transdiagnostic; voxel-based morphometry

Mesh:

Year:  2018        PMID: 29717540      PMCID: PMC6866579          DOI: 10.1002/hbm.24078

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  74 in total

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Authors:  Andrew T Reid; Danilo Bzdok; Sarah Genon; Robert Langner; Veronika I Müller; Claudia R Eickhoff; Felix Hoffstaedter; Edna-Clarisse Cieslik; Peter T Fox; Angela R Laird; Katrin Amunts; Svenja Caspers; Simon B Eickhoff
Journal:  Neuroimage       Date:  2015-07-29       Impact factor: 6.556

2.  BrainMap taxonomy of experimental design: description and evaluation.

Authors:  Peter T Fox; Angela R Laird; Sarabeth P Fox; P Mickle Fox; Angela M Uecker; Michelle Crank; Sandra F Koenig; Jack L Lancaster
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3.  Behavioral interpretations of intrinsic connectivity networks.

Authors:  Angela R Laird; P Mickle Fox; Simon B Eickhoff; Jessica A Turner; Kimberly L Ray; D Reese McKay; David C Glahn; Christian F Beckmann; Stephen M Smith; Peter T Fox
Journal:  J Cogn Neurosci       Date:  2011-06-14       Impact factor: 3.225

4.  Predicting regional neurodegeneration from the healthy brain functional connectome.

Authors:  Juan Zhou; Efstathios D Gennatas; Joel H Kramer; Bruce L Miller; William W Seeley
Journal:  Neuron       Date:  2012-03-21       Impact factor: 17.173

Review 5.  Evaluating the consistency and specificity of neuroimaging data using meta-analysis.

Authors:  Tor D Wager; Martin A Lindquist; Thomas E Nichols; Hedy Kober; Jared X Van Snellenberg
Journal:  Neuroimage       Date:  2008-11-20       Impact factor: 6.556

6.  Altered small-world properties of gray matter networks in breast cancer.

Authors:  S M Hadi Hosseini; Della Koovakkattu; Shelli R Kesler
Journal:  BMC Neurol       Date:  2012-05-28       Impact factor: 2.474

7.  Correspondence between structure and function in the human brain at rest.

Authors:  Judith M Segall; Elena A Allen; Rex E Jung; Erik B Erhardt; Sunil K Arja; Kent Kiehl; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2012-03-27       Impact factor: 4.081

8.  ICA model order selection of task co-activation networks.

Authors:  Kimberly L Ray; D Reese McKay; Peter M Fox; Michael C Riedel; Angela M Uecker; Christian F Beckmann; Stephen M Smith; Peter T Fox; Angela R Laird
Journal:  Front Neurosci       Date:  2013-12-10       Impact factor: 4.677

9.  Differences in human cortical gene expression match the temporal properties of large-scale functional networks.

Authors:  Claudia Cioli; Hervé Abdi; Derek Beaton; Yves Burnod; Salma Mesmoudi
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10.  Minimum statistical standards for submissions to Neuroimage: Clinical.

Authors:  J P Roiser; D E Linden; M L Gorno-Tempinin; R J Moran; B C Dickerson; S T Grafton
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  26 in total

1.  Localised grey matter atrophy in multiple sclerosis is network-based: a coordinate-based meta-analysis.

Authors:  F L Chiang; Q Wang; F F Yu; R S Romero; S Y Huang; P M Fox; B Tantiwongkosi; P T Fox
Journal:  Clin Radiol       Date:  2019-08-14       Impact factor: 2.350

2.  Brain structural alterations are distributed following functional, anatomic and genetic connectivity.

Authors:  Franco Cauda; Andrea Nani; Jordi Manuello; Enrico Premi; Sara Palermo; Karina Tatu; Sergio Duca; Peter T Fox; Tommaso Costa
Journal:  Brain       Date:  2018-11-01       Impact factor: 13.501

3.  Mapping gene transcription and neurocognition across human neocortex.

Authors:  Justine Y Hansen; Ross D Markello; Jacob W Vogel; Jakob Seidlitz; Danilo Bzdok; Bratislav Misic
Journal:  Nat Hum Behav       Date:  2021-03-25

4.  Multimodal Abnormalities of Brain Structure and Function in Major Depressive Disorder: A Meta-Analysis of Neuroimaging Studies.

Authors:  Jodie P Gray; Veronika I Müller; Simon B Eickhoff; Peter T Fox
Journal:  Am J Psychiatry       Date:  2020-02-26       Impact factor: 18.112

5.  BrainMap VBM: An environment for structural meta-analysis.

Authors:  Thomas J Vanasse; P Mickle Fox; Daniel S Barron; Michaela Robertson; Simon B Eickhoff; Jack L Lancaster; Peter T Fox
Journal:  Hum Brain Mapp       Date:  2018-05-02       Impact factor: 5.038

6.  A neural signature of metabolic syndrome.

Authors:  Eithan Kotkowski; Larry R Price; Crystal Franklin; Maximino Salazar; Mary Woolsey; Ralph A DeFronzo; John Blangero; David C Glahn; Peter T Fox
Journal:  Hum Brain Mapp       Date:  2019-05-07       Impact factor: 5.038

7.  Transdiagnostic, Connectome-Based Prediction of Memory Constructs Across Psychiatric Disorders.

Authors:  Daniel S Barron; Siyuan Gao; Javid Dadashkarimi; Abigail S Greene; Marisa N Spann; Stephanie Noble; Evelyn M R Lake; John H Krystal; R Todd Constable; Dustin Scheinost
Journal:  Cereb Cortex       Date:  2021-03-31       Impact factor: 5.357

8.  BACON: A tool for reverse inference in brain activation and alteration.

Authors:  Tommaso Costa; Jordi Manuello; Mario Ferraro; Donato Liloia; Andrea Nani; Peter T Fox; Jack Lancaster; Franco Cauda
Journal:  Hum Brain Mapp       Date:  2021-05-15       Impact factor: 5.038

9.  Low entropy maps as patterns of the pathological alteration specificity of brain regions: A meta-analysis dataset.

Authors:  Donato Liloia; Franco Cauda; Andrea Nani; Jordi Manuello; Sergio Duca; Peter T Fox; Tommaso Costa
Journal:  Data Brief       Date:  2018-10-30

10.  Estimating the prevalence of missing experiments in a neuroimaging meta-analysis.

Authors:  Pantelis Samartsidis; Silvia Montagna; Angela R Laird; Peter T Fox; Timothy D Johnson; Thomas E Nichols
Journal:  Res Synth Methods       Date:  2020-09-27       Impact factor: 5.273

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