Literature DB >> 15846810

BrainMap taxonomy of experimental design: description and evaluation.

Peter T Fox1, Angela R Laird, Sarabeth P Fox, P Mickle Fox, Angela M Uecker, Michelle Crank, Sandra F Koenig, Jack L Lancaster.   

Abstract

Coordinate-based, voxel-wise meta-analysis is an exciting recent addition to the human functional brain mapping literature. In view of the critical importance of selection criteria for any valid meta-analysis, a taxonomy of experimental design should be an important tool for aiding in the design of rigorous meta-analyses. The coding scheme of experimental designs developed for and implemented within the BrainMap database provides a candidate taxonomy. In this study, the BrainMap experimental-design taxonomy is described and evaluated by comparing taxonomy fields to data-filtering choices made by subject-matter experts carrying out meta-analyses of the functional imaging literature. Fifteen publications reporting a total of 46 voxel-wise meta-analyses were included in this assessment. Collectively these 46 meta-analyses pooled data from 351 publications, selected for experimental similarity within each meta-analysis. Filter implementations within BrainMap were graded by ease-of-use (A-C) and by stage-of-use (1-3). Quality filters and content filters were tabulated separately. Quality filters required for data entry into BrainMap were classed as mandatory (five filters), being above the use grading system. All authors spontaneously adopted the five mandatory filters in constructing their meta-analysis, indicating excellent agreement on data quality among authors and between authors and the BrainMap development team. Two non-mandatory quality filters (group size and imaging modality) were applied by all authors; both were Stage 1, Grade A filters. Field-of-view filters were the least-accessible quality filters (Stage 3, Grade C); two field-of-view filters were applied by six and four authors, respectively. Authors made a total of 115 content-filter choices. Of these, 78 (68%) were Stage 1, Grade A filters; 16 (14%) were Stage 2, Grade A; and 21 (18%) were Stage 2, Grade C. No author-applied filter was absent from the taxonomy.

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Year:  2005        PMID: 15846810      PMCID: PMC6871758          DOI: 10.1002/hbm.20141

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  27 in total

1.  Automated Talairach atlas labels for functional brain mapping.

Authors:  J L Lancaster; M G Woldorff; L M Parsons; M Liotti; C S Freitas; L Rainey; P V Kochunov; D Nickerson; S A Mikiten; P T Fox
Journal:  Hum Brain Mapp       Date:  2000-07       Impact factor: 5.038

2.  Functional heterogeneity within Broca's area during verbal working memory.

Authors:  J M Chein; K Fissell; S Jacobs; J A Fiez
Journal:  Physiol Behav       Date:  2002-12

3.  Neuroimaging studies of shifting attention: a meta-analysis.

Authors:  Tor D Wager; John Jonides; Susan Reading
Journal:  Neuroimage       Date:  2004-08       Impact factor: 6.556

4.  A comparison of label-based review and ALE meta-analysis in the Stroop task.

Authors:  Angela R Laird; Kathryn M McMillan; Jack L Lancaster; Peter Kochunov; Peter E Turkeltaub; Jose V Pardo; Peter T Fox
Journal:  Hum Brain Mapp       Date:  2005-05       Impact factor: 5.038

5.  Meta-analyses of object naming: effect of baseline.

Authors:  Cathy J Price; Joseph T Devlin; Caroline J Moore; Christopher Morton; Angela R Laird
Journal:  Hum Brain Mapp       Date:  2005-05       Impact factor: 5.038

6.  Involvement of the inferior frontal junction in cognitive control: meta-analyses of switching and Stroop studies.

Authors:  Jan Derrfuss; Marcel Brass; Jane Neumann; D Yves von Cramon
Journal:  Hum Brain Mapp       Date:  2005-05       Impact factor: 5.038

7.  BrainMap: the social evolution of a human brain mapping database.

Authors:  Angela R Laird; Jack L Lancaster; Peter T Fox
Journal:  Neuroinformatics       Date:  2005

8.  A functional neuroanatomy of hallucinations in schizophrenia.

Authors:  D A Silbersweig; E Stern; C Frith; C Cahill; A Holmes; S Grootoonk; J Seaward; P McKenna; S E Chua; L Schnorr
Journal:  Nature       Date:  1995-11-09       Impact factor: 49.962

Review 9.  Beyond the single study: function/location metanalysis in cognitive neuroimaging.

Authors:  P T Fox; L M Parsons; J L Lancaster
Journal:  Curr Opin Neurobiol       Date:  1998-04       Impact factor: 6.627

Review 10.  Location and function of the human frontal eye-field: a selective review.

Authors:  T Paus
Journal:  Neuropsychologia       Date:  1996-06       Impact factor: 3.139

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  134 in total

1.  Modeling Dynamic Functional Neuroimaging Data Using Structural Equation Modeling.

Authors:  Larry R Price; Angela R Laird; Peter T Fox; Roger J Ingham
Journal:  Struct Equ Modeling       Date:  2009       Impact factor: 6.125

2.  Haploinsufficiency of MeCP2-interacting transcriptional co-repressor SIN3A causes mild intellectual disability by affecting the development of cortical integrity.

Authors:  Josefine S Witteveen; Marjolein H Willemsen; Thaís C D Dombroski; Nick H M van Bakel; Willy M Nillesen; Josephus A van Hulten; Eric J R Jansen; Dave Verkaik; Hermine E Veenstra-Knol; Conny M A van Ravenswaaij-Arts; Jolien S Klein Wassink-Ruiter; Marie Vincent; Albert David; Cedric Le Caignec; Jolanda Schieving; Christian Gilissen; Nicola Foulds; Patrick Rump; Tim Strom; Kirsten Cremer; Alexander M Zink; Hartmut Engels; Sonja A de Munnik; Jasper E Visser; Han G Brunner; Gerard J M Martens; Rolph Pfundt; Tjitske Kleefstra; Sharon M Kolk
Journal:  Nat Genet       Date:  2016-07-11       Impact factor: 38.330

Review 3.  Coordinate-based voxel-wise meta-analysis: dividends of spatial normalization. Report of a virtual workshop.

Authors:  Peter T Fox; Angela R Laird; Jack L Lancaster
Journal:  Hum Brain Mapp       Date:  2005-05       Impact factor: 5.038

4.  Is it time to re-prioritize neuroimaging databases and digital repositories?

Authors:  John Darrell Van Horn; Arthur W Toga
Journal:  Neuroimage       Date:  2009-04-14       Impact factor: 6.556

5.  The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Authors:  William J Bug; Giorgio A Ascoli; Jeffrey S Grethe; Amarnath Gupta; Christine Fennema-Notestine; Angela R Laird; Stephen D Larson; Daniel Rubin; Gordon M Shepherd; Jessica A Turner; Maryann E Martone
Journal:  Neuroinformatics       Date:  2008-10-31

6.  Making sense of brain network data.

Authors:  Olaf Sporns
Journal:  Nat Methods       Date:  2013-06       Impact factor: 28.547

7.  Template construction grammar: from visual scene description to language comprehension and agrammatism.

Authors:  Victor Barrès; Jinyong Lee
Journal:  Neuroinformatics       Date:  2014-01

8.  Spatially aggregated multiclass pattern classification in functional MRI using optimally selected functional brain areas.

Authors:  Weili Zheng; Elena S Ackley; Manel Martínez-Ramón; Stefan Posse
Journal:  Magn Reson Imaging       Date:  2012-08-16       Impact factor: 2.546

9.  Functional connectivity mapping of regions associated with self- and other-processing.

Authors:  Ryan J Murray; Martin Debbané; Peter T Fox; Danilo Bzdok; Simon B Eickhoff
Journal:  Hum Brain Mapp       Date:  2014-12-06       Impact factor: 5.038

10.  Multimodal Abnormalities of Brain Structure and Function in Major Depressive Disorder: A Meta-Analysis of Neuroimaging Studies.

Authors:  Jodie P Gray; Veronika I Müller; Simon B Eickhoff; Peter T Fox
Journal:  Am J Psychiatry       Date:  2020-02-26       Impact factor: 18.112

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