Literature DB >> 29714357

Joint Intensity Fusion Image Synthesis Applied to Multiple Sclerosis Lesion Segmentation.

Greg M Fleishman1, Alessandra Valcarcel2, Dzung L Pham3, Snehashis Roy3, Peter A Calabresi4, Paul Yushkevich1, Russell T Shinohara2, Ipek Oguz1.   

Abstract

We propose a new approach to Multiple Sclerosis lesion segmentation that utilizes synthesized images. A new method of image synthesis is considered: joint intensity fusion (JIF). JIF synthesizes an image from a library of deformably registered and intensity normalized atlases. Each location in the synthesized image is a weighted average of the registered atlases; atlas weights vary spatially. The weights are determined using the joint label fusion (JLF) framework. The primary methodological contribution is the application of JLF to MRI signal directly rather than labels. Synthesized images are then used as additional features in a lesion segmentation task using the OASIS classifier, a logistic regression model on intensities from multiple modalities. The addition of JIF synthesized images improved the Dice-Sorensen coefficient (relative to manually drawn gold standards) of lesion segmentations over the standard model segmentations by 0.0462 ± 0.0050 (mean ± standard deviation) at optimal threshold over all subjects and 10 separate training/testing folds.

Entities:  

Year:  2018        PMID: 29714357      PMCID: PMC5920684     

Source DB:  PubMed          Journal:  Brainlesion


  20 in total

1.  Template-Based Multimodal Joint Generative Model of Brain Data.

Authors:  M Jorge Cardoso; Carole H Sudre; Marc Modat; Sebastien Ourselin
Journal:  Inf Process Med Imaging       Date:  2015

2.  Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.

Authors:  Aaron Carass; Snehashis Roy; Amod Jog; Jennifer L Cuzzocreo; Elizabeth Magrath; Adrian Gherman; Julia Button; James Nguyen; Ferran Prados; Carole H Sudre; Manuel Jorge Cardoso; Niamh Cawley; Olga Ciccarelli; Claudia A M Wheeler-Kingshott; Sébastien Ourselin; Laurence Catanese; Hrishikesh Deshpande; Pierre Maurel; Olivier Commowick; Christian Barillot; Xavier Tomas-Fernandez; Simon K Warfield; Suthirth Vaidya; Abhijith Chunduru; Ramanathan Muthuganapathy; Ganapathy Krishnamurthi; Andrew Jesson; Tal Arbel; Oskar Maier; Heinz Handels; Leonardo O Iheme; Devrim Unay; Saurabh Jain; Diana M Sima; Dirk Smeets; Mohsen Ghafoorian; Bram Platel; Ariel Birenbaum; Hayit Greenspan; Pierre-Louis Bazin; Peter A Calabresi; Ciprian M Crainiceanu; Lotta M Ellingsen; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage       Date:  2017-01-11       Impact factor: 6.556

3.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data.

Authors:  J G Sled; A P Zijdenbos; A C Evans
Journal:  IEEE Trans Med Imaging       Date:  1998-02       Impact factor: 10.048

4.  Simple paradigm for extra-cerebral tissue removal: algorithm and analysis.

Authors:  Aaron Carass; Jennifer Cuzzocreo; M Bryan Wheeler; Pierre-Louis Bazin; Susan M Resnick; Jerry L Prince
Journal:  Neuroimage       Date:  2011-03-31       Impact factor: 6.556

Review 5.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

Review 6.  Immunopathology of multiple sclerosis.

Authors:  Calliope A Dendrou; Lars Fugger; Manuel A Friese
Journal:  Nat Rev Immunol       Date:  2015-08-07       Impact factor: 53.106

7.  A topology-preserving approach to the segmentation of brain images with multiple sclerosis lesions.

Authors:  Navid Shiee; Pierre-Louis Bazin; Arzu Ozturk; Daniel S Reich; Peter A Calabresi; Dzung L Pham
Journal:  Neuroimage       Date:  2009-09-17       Impact factor: 6.556

Review 8.  Review of automatic segmentation methods of multiple sclerosis white matter lesions on conventional magnetic resonance imaging.

Authors:  Daniel García-Lorenzo; Simon Francis; Sridar Narayanan; Douglas L Arnold; D Louis Collins
Journal:  Med Image Anal       Date:  2012-09-29       Impact factor: 8.545

9.  OASIS is Automated Statistical Inference for Segmentation, with applications to multiple sclerosis lesion segmentation in MRI.

Authors:  Elizabeth M Sweeney; Russell T Shinohara; Navid Shiee; Farrah J Mateen; Avni A Chudgar; Jennifer L Cuzzocreo; Peter A Calabresi; Dzung L Pham; Daniel S Reich; Ciprian M Crainiceanu
Journal:  Neuroimage Clin       Date:  2013-03-15       Impact factor: 4.881

10.  Statistical estimation of white matter microstructure from conventional MRI.

Authors:  Leah H Suttner; Amanda Mejia; Blake Dewey; Pascal Sati; Daniel S Reich; Russell T Shinohara
Journal:  Neuroimage Clin       Date:  2016-09-14       Impact factor: 4.881

View more
  2 in total

1.  Self-fusion for OCT noise reduction.

Authors:  Ipek Oguz; Joseph D Malone; Yigit Atay; Yuankai K Tao
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

2.  LIFE: A Generalizable Autodidactic Pipeline for 3D OCT-A Vessel Segmentation.

Authors:  Dewei Hu; Can Cui; Hao Li; Kathleen E Larson; Yuankai K Tao; Ipek Oguz
Journal:  Med Image Comput Comput Assist Interv       Date:  2021-09-21
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.