Literature DB >> 35794828

An NMR look at an engineered PET depolymerase.

Cyril Charlier1, Sabine Gavalda2, Vinciane Borsenberger2, Sophie Duquesne1, Alain Marty2, Vincent Tournier2, Guy Lippens3.   

Abstract

Plastic environmental pollution is a major issue that our generation must face to protect our planet. Plastic recycling has the potential not only to reduce the pollution but also to limit the need for fossil-fuel-based production of new plastics. Enzymes capable of breaking down plastic could thereby support such a circular economy. Polyethylene terephthalate (PET) degrading enzymes have recently attracted considerable interest and have been subjected to intensive enzyme engineering to improve their characteristics. A quadruple mutant of Leaf-branch Compost Cutinase (LCC) was identified as a most efficient and promising enzyme. Here, we use NMR to follow the initial LCC enzyme through its different mutations that lead to its improved performance. We experimentally define the two calcium-binding sites and show their importance on the all-or-nothing thermal unfolding process, which occurs at a temperature of 72°C close to the PET glass transition temperature. Using various NMR probes such as backbone amide, methyl group, and histidine side-chain resonances, we probe the interaction of the enzymes with mono-(2-hydroxyethyl)terephthalic acid. The latter experiments are interpreted in terms of accessibility of the active site to the polymer chain.
Copyright © 2022 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2022        PMID: 35794828      PMCID: PMC9388554          DOI: 10.1016/j.bpj.2022.07.002

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  60 in total

1.  Structural basis for the Ca(2+)-enhanced thermostability and activity of PET-degrading cutinase-like enzyme from Saccharomonospora viridis AHK190.

Authors:  Takuya Miyakawa; Hiroki Mizushima; Jun Ohtsuka; Masayuki Oda; Fusako Kawai; Masaru Tanokura
Journal:  Appl Microbiol Biotechnol       Date:  2014-12-11       Impact factor: 4.813

Review 2.  Structural studies reveal the molecular mechanism of PETase.

Authors:  Chun-Chi Chen; Xu Han; Tzu-Ping Ko; Weidong Liu; Rey-Ting Guo
Journal:  FEBS J       Date:  2018-08-17       Impact factor: 5.542

3.  Structural and functional studies on a thermostable polyethylene terephthalate degrading hydrolase from Thermobifida fusca.

Authors:  Christian Roth; Ren Wei; Thorsten Oeser; Johannes Then; Christina Föllner; Wolfgang Zimmermann; Norbert Sträter
Journal:  Appl Microbiol Biotechnol       Date:  2014-04-13       Impact factor: 4.813

Review 4.  Automated assignment of methyl NMR spectra from large proteins.

Authors:  Iva Pritišanac; T Reid Alderson; Peter Güntert
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2020-04-24       Impact factor: 9.795

5.  A bacterium that degrades and assimilates poly(ethylene terephthalate).

Authors:  Shosuke Yoshida; Kazumi Hiraga; Toshihiko Takehana; Ikuo Taniguchi; Hironao Yamaji; Yasuhito Maeda; Kiyotsuna Toyohara; Kenji Miyamoto; Yoshiharu Kimura; Kohei Oda
Journal:  Science       Date:  2016-03-11       Impact factor: 47.728

6.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

7.  Non-Uniform Sampling for All: More NMR Spectral Quality, Less Measurement Time.

Authors:  Frank Delaglio; Gregory S Walker; Kathleen A Farley; Raman Sharma; Jeffrey C Hoch; Luke W Arbogast; Robert G Brinson; John P Marino
Journal:  Am Pharm Rev       Date:  2017-06-30

8.  CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts.

Authors:  Noor E Hafsa; David Arndt; David S Wishart
Journal:  Nucleic Acids Res       Date:  2015-05-15       Impact factor: 16.971

9.  Backbone-independent NMR resonance assignments of methyl probes in large proteins.

Authors:  Santrupti Nerli; Viviane S De Paula; Andrew C McShan; Nikolaos G Sgourakis
Journal:  Nat Commun       Date:  2021-01-29       Impact factor: 14.919

10.  Structural insight into molecular mechanism of poly(ethylene terephthalate) degradation.

Authors:  Seongjoon Joo; In Jin Cho; Hogyun Seo; Hyeoncheol Francis Son; Hye-Young Sagong; Tae Joo Shin; So Young Choi; Sang Yup Lee; Kyung-Jin Kim
Journal:  Nat Commun       Date:  2018-01-26       Impact factor: 14.919

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