Literature DB >> 29680562

Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater.

Deni Ribicic1, Roman Netzer2, Terry C Hazen3, Stephen M Techtmann4, Finn Drabløs5, Odd Gunnar Brakstad2.   

Abstract

Oil biodegradation as a weathering process has been extensively investigated over the years, especially after the Deepwater Horizon blowout. In this study, we performed microcosm experiments at 5 °C with chemically dispersed oil in non-amended seawater. We link biodegradation processes with microbial community and metagenome dynamics and explain the succession based on substrate specialization. Reconstructed genomes and 16S rRNA gene analysis revealed that Bermanella and Zhongshania were the main contributors to initial n-alkane breakdown, while subsequent abundances of Colwellia and microorganisms closely related to Porticoccaceae were involved in secondary n‑alkane breakdown and beta‑oxidation. Cycloclasticus, Porticoccaceae and Spongiiabcteraceae were associated with degradation of mono- and poly-cyclic aromatics. Successional pattern of genes coding for hydrocarbon degrading enzymes at metagenome level, and reconstructed genomic content, revealed a high differentiation of bacteria involved in hydrocarbon biodegradation. A cooperation among oil degrading microorganisms is thus needed for the complete substrate transformation.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  16S rRNA; Biodegradation; Bioremediation; Chemical dispersant; Metagenomics; Petroleum

Mesh:

Substances:

Year:  2018        PMID: 29680562     DOI: 10.1016/j.marpolbul.2018.02.034

Source DB:  PubMed          Journal:  Mar Pollut Bull        ISSN: 0025-326X            Impact factor:   5.553


  14 in total

1.  H2 Metabolism revealed by metagenomic analysis of subglacial sediment from East Antarctica.

Authors:  Zhifeng Yang; Yu Zhang; Yongxin Lv; Wenkai Yan; Xiang Xiao; Bo Sun; Hongmei Ma
Journal:  J Microbiol       Date:  2019-11-22       Impact factor: 3.422

2.  Harnessing the Potential of Native Microbial Communities for Bioremediation of Oil Spills in the Iberian Peninsula NW Coast.

Authors:  Maria L Bôto; Catarina Magalhães; Rafaela Perdigão; Diogo A M Alexandrino; Joana P Fernandes; Ana M Bernabeu; Sandra Ramos; Maria F Carvalho; Miguel Semedo; Julie LaRoche; C Marisa R Almeida; Ana P Mucha
Journal:  Front Microbiol       Date:  2021-04-23       Impact factor: 5.640

3.  Metatranscriptomic Analysis of Oil-Exposed Seawater Bacterial Communities Archived by an Environmental Sample Processor (ESP).

Authors:  Kamila Knapik; Andrea Bagi; Adriana Krolicka; Thierry Baussant
Journal:  Microorganisms       Date:  2020-05-15

4.  Insights on aquatic microbiome of the Indian Sundarbans mangrove areas.

Authors:  Paltu Kumar Dhal; Germán A Kopprio; Astrid Gärdes
Journal:  PLoS One       Date:  2020-02-25       Impact factor: 3.240

5.  Metagenomics and Quantitative Stable Isotope Probing Offer Insights into Metabolism of Polycyclic Aromatic Hydrocarbon Degraders in Chronically Polluted Seawater.

Authors:  Ella T Sieradzki; Michael Morando; Jed A Fuhrman
Journal:  mSystems       Date:  2021-05-11       Impact factor: 6.496

6.  Assessment of Hydrocarbon Degradation Potential in Microbial Communities in Arctic Sea Ice.

Authors:  Angela Peeb; Nga Phuong Dang; Marika Truu; Hiie Nõlvak; Chris Petrich; Jaak Truu
Journal:  Microorganisms       Date:  2022-02-01

7.  Trophic Status Is Associated With Community Structure and Metabolic Potential of Planktonic Microbiota in Plateau Lakes.

Authors:  Mengyuan Shen; Qi Li; Minglei Ren; Yan Lin; Juanping Wang; Li Chen; Tao Li; Jindong Zhao
Journal:  Front Microbiol       Date:  2019-11-07       Impact factor: 5.640

8.  Effects of Dispersants and Biosurfactants on Crude-Oil Biodegradation and Bacterial Community Succession.

Authors:  Gareth E Thomas; Jan L Brant; Pablo Campo; Dave R Clark; Frederic Coulon; Benjamin H Gregson; Terry J McGenity; Boyd A McKew
Journal:  Microorganisms       Date:  2021-06-01

9.  Microbial Community Dynamics during Biodegradation of Crude Oil and Its Response to Biostimulation in Svalbard Seawater at Low Temperature.

Authors:  Hiie Nõlvak; Nga Phuong Dang; Marika Truu; Angela Peeb; Kertu Tiirik; Megan O'Sadnick; Jaak Truu
Journal:  Microorganisms       Date:  2021-11-24

10.  Genetic and phylogenetic analysis of dissimilatory iodate-reducing bacteria identifies potential niches across the world's oceans.

Authors:  Victor Reyes-Umana; Zachary Henning; Kristina Lee; Tyler P Barnum; John D Coates
Journal:  ISME J       Date:  2021-07-02       Impact factor: 10.302

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