Literature DB >> 29670703

Further Exploring Solvent-Exposed Tolerant Regions of Allosteric Binding Pocket for Novel HIV-1 NNRTIs Discovery.

Dongwei Kang1, Zhao Wang1, Heng Zhang1, Gaochan Wu1, Tong Zhao1, Zhongxia Zhou1, Zhipeng Huo1, Boshi Huang1, Da Feng1, Xiao Ding1, Jian Zhang1, Xiaofang Zuo1, Lanlan Jing1, Wei Luo1, Samuel Guma1, Dirk Daelemans2, Erik De Clercq2, Christophe Pannecouque2, Peng Zhan1, Xinyong Liu1.   

Abstract

Based on the detailed analysis of the binding mode of diarylpyrimidines (DAPYs) with HIV-1 RT, we designed several subseries of novel NNRTIs, with the aim to probe biologically relevant chemical space of solvent-exposed tolerant regions in NNRTIs binding pocket (NNIBP). The most potent compound 21a exhibited significant activity against the whole viral panel, being about 1.5-2.6-fold (WT, EC50 = 2.44 nM; L100I, EC50 = 4.24 nM; Y181C, EC50 = 4.80 nM; F227L + V106A, EC50 = 17.8 nM) and 4-5-fold (K103N, EC50 = 1.03 nM; Y188L, EC50 = 7.16 nM; E138K, EC50 = 3.95 nM) more potent than the reference drug ETV. Furthermore, molecular simulation was conducted to understand the binding mode of interactions of these novel NNRTIs and to provide insights for the next optimization studies.

Entities:  

Year:  2018        PMID: 29670703      PMCID: PMC5900328          DOI: 10.1021/acsmedchemlett.8b00054

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  18 in total

Review 1.  Anti-HIV Drug Discovery and Development: Current Innovations and Future Trends.

Authors:  Peng Zhan; Christophe Pannecouque; Erik De Clercq; Xinyong Liu
Journal:  J Med Chem       Date:  2015-11-05       Impact factor: 7.446

2.  Thermodynamics of HIV-1 reverse transcriptase in action elucidates the mechanism of action of non-nucleoside inhibitors.

Authors:  Guillaume Bec; Benoit Meyer; Marie-Aline Gerard; Jessica Steger; Katja Fauster; Philippe Wolff; Dominique Burnouf; Ronald Micura; Philippe Dumas; Eric Ennifar
Journal:  J Am Chem Soc       Date:  2013-06-18       Impact factor: 15.419

Review 3.  HIV-1 NNRTIs: structural diversity, pharmacophore similarity, and implications for drug design.

Authors:  Peng Zhan; Xuwang Chen; Dongyue Li; Zengjun Fang; Erik De Clercq; Xinyong Liu
Journal:  Med Res Rev       Date:  2011-04-26       Impact factor: 12.944

Review 4.  Novel fused pyrimidine and isoquinoline derivatives as potent HIV-1 NNRTIs: a patent evaluation of WO2016105532A1, WO2016105534A1 and WO2016105564A1.

Authors:  Dongwei Kang; Zhipeng Huo; Gaochan Wu; Jiabao Xu; Peng Zhan; Xinyong Liu
Journal:  Expert Opin Ther Pat       Date:  2017-03-09       Impact factor: 6.674

5.  Fused heterocycles bearing bridgehead nitrogen as potent HIV-1 NNRTIs. Part 4: design, synthesis and biological evaluation of novel imidazo[1,2-a]pyrazines.

Authors:  Boshi Huang; Xin Liang; Cuicui Li; Wenmin Chen; Tao Liu; Xiao Li; Yueyue Sun; Lu Fu; Huiqing Liu; Erik De Clercq; Christophe Pannecouque; Peng Zhan; Xinyong Liu
Journal:  Eur J Med Chem       Date:  2015-02-16       Impact factor: 6.514

Review 6.  Recent advances in DAPYs and related analogues as HIV-1 NNRTIs.

Authors:  Xuwang Chen; Peng Zhan; Dongyue Li; Erik De Clercq; Xinyong Liu
Journal:  Curr Med Chem       Date:  2011       Impact factor: 4.530

7.  AIDS. Turning the tide against HIV.

Authors:  Robin J Shattock; Mitchell Warren; Sheena McCormack; Catherine A Hankins
Journal:  Science       Date:  2011-07-01       Impact factor: 47.728

8.  Fused heterocycles bearing bridgehead nitrogen as potent HIV-1 NNRTIs. Part 2: discovery of novel [1,2,4]Triazolo[1,5-a]pyrimidines using a structure-guided core-refining approach.

Authors:  Liu Wang; Ye Tian; Wenmin Chen; Hong Liu; Peng Zhan; Dongyue Li; Huiqing Liu; Erik De Clercq; Christophe Pannecouque; Xinyong Liu
Journal:  Eur J Med Chem       Date:  2014-07-30       Impact factor: 6.514

9.  Design, Synthesis, and Evaluation of Thiophene[3,2-d]pyrimidine Derivatives as HIV-1 Non-nucleoside Reverse Transcriptase Inhibitors with Significantly Improved Drug Resistance Profiles.

Authors:  Dongwei Kang; Zengjun Fang; Zhenyu Li; Boshi Huang; Heng Zhang; Xueyi Lu; Haoran Xu; Zhongxia Zhou; Xiao Ding; Dirk Daelemans; Erik De Clercq; Christophe Pannecouque; Peng Zhan; Xinyong Liu
Journal:  J Med Chem       Date:  2016-08-26       Impact factor: 7.446

10.  Discovery of Thiophene[3,2-d]pyrimidine Derivatives as Potent HIV-1 NNRTIs Targeting the Tolerant Region I of NNIBP.

Authors:  Dongwei Kang; Xiao Ding; Gaochan Wu; Zhipeng Huo; Zhongxia Zhou; Tong Zhao; Da Feng; Zhao Wang; Ye Tian; Dirk Daelemans; Erik De Clercq; Christophe Pannecouque; Peng Zhan; Xinyong Liu
Journal:  ACS Med Chem Lett       Date:  2017-10-19       Impact factor: 4.345

View more
  4 in total

1.  The Journey of HIV-1 Non-Nucleoside Reverse Transcriptase Inhibitors (NNRTIs) from Lab to Clinic.

Authors:  Vigneshwaran Namasivayam; Murugesan Vanangamudi; Victor G Kramer; Sonali Kurup; Peng Zhan; Xinyong Liu; Jacob Kongsted; Siddappa N Byrareddy
Journal:  J Med Chem       Date:  2018-12-27       Impact factor: 7.446

Review 2.  Evolving understanding of HIV-1 reverse transcriptase structure, function, inhibition, and resistance.

Authors:  Francesc Xavier Ruiz; Eddy Arnold
Journal:  Curr Opin Struct Biol       Date:  2020-01-11       Impact factor: 6.809

3.  Perspective: The promises of a holistic view of proteins-impact on antibody engineering and drug discovery.

Authors:  Ser-Xian Phua; Kwok-Fong Chan; Chinh Tran-To Su; Jun-Jie Poh; Samuel Ken-En Gan
Journal:  Biosci Rep       Date:  2019-01-30       Impact factor: 3.840

4.  The development of an effective synthetic route of rilpivirine.

Authors:  Tao Zhang; Jiapei Yang; Zhongxia Zhou; Zhipeng Fu; Srinivasulu Cherukupalli; Dongwei Kang; Peng Zhan; Xinyong Liu
Journal:  BMC Chem       Date:  2021-04-01
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.