Literature DB >> 26353252

Scaling Multidimensional Inference for Structured Gaussian Processes.

Elad Gilboa, Yunus Saatçi, John P Cunningham.   

Abstract

Exact Gaussian process (GP) regression has O(N(3)) runtime for data size N, making it intractable for large N . Many algorithms for improving GP scaling approximate the covariance with lower rank matrices. Other work has exploited structure inherent in particular covariance functions, including GPs with implied Markov structure, and inputs on a lattice (both enable O(N) or O(N log N) runtime). However, these GP advances have not been well extended to the multidimensional input setting, despite the preponderance of multidimensional applications. This paper introduces and tests three novel extensions of structured GPs to multidimensional inputs, for models with additive and multiplicative kernels. First we present a new method for inference in additive GPs, showing a novel connection between the classic backfitting method and the Bayesian framework. We extend this model using two advances: a variant of projection pursuit regression, and a Laplace approximation for non-Gaussian observations. Lastly, for multiplicative kernel structure, we present a novel method for GPs with inputs on a multidimensional grid. We illustrate the power of these three advances on several data sets, achieving performance equal to or very close to the naive GP at orders of magnitude less cost.

Year:  2015        PMID: 26353252     DOI: 10.1109/TPAMI.2013.192

Source DB:  PubMed          Journal:  IEEE Trans Pattern Anal Mach Intell        ISSN: 0098-5589            Impact factor:   6.226


  7 in total

1.  On nearest-neighbor Gaussian process models for massive spatial data.

Authors:  Abhirup Datta; Sudipto Banerjee; Andrew O Finley; Alan E Gelfand
Journal:  Wiley Interdiscip Rev Comput Stat       Date:  2016-08-04

2.  Adaptive smoothing based on Gaussian processes regression increases the sensitivity and specificity of fMRI data.

Authors:  Francesca Strappini; Elad Gilboa; Sabrina Pitzalis; Kendrick Kay; Mark McAvoy; Arye Nehorai; Abraham Z Snyder
Journal:  Hum Brain Mapp       Date:  2016-12-10       Impact factor: 5.038

3.  Spatial Multivariate Trees for Big Data Bayesian Regression.

Authors:  Michele Peruzzi; David B Dunson
Journal:  J Mach Learn Res       Date:  2022       Impact factor: 5.177

4.  Structure in neural population recordings: an expected byproduct of simpler phenomena?

Authors:  Gamaleldin F Elsayed; John P Cunningham
Journal:  Nat Neurosci       Date:  2017-08-07       Impact factor: 24.884

5.  Electrical stimulus artifact cancellation and neural spike detection on large multi-electrode arrays.

Authors:  Gonzalo E Mena; Lauren E Grosberg; Sasidhar Madugula; Paweł Hottowy; Alan Litke; John Cunningham; E J Chichilnisky; Liam Paninski
Journal:  PLoS Comput Biol       Date:  2017-11-13       Impact factor: 4.475

6.  Spatiotemporal prediction of infectious diseases using structured Gaussian processes with application to Crimean-Congo hemorrhagic fever.

Authors:  Çiğdem Ak; Önder Ergönül; İrfan Şencan; Mehmet Ali Torunoğlu; Mehmet Gönen
Journal:  PLoS Negl Trop Dis       Date:  2018-08-17

Review 7.  Machine Learning Methods in Drug Discovery.

Authors:  Lauv Patel; Tripti Shukla; Xiuzhen Huang; David W Ussery; Shanzhi Wang
Journal:  Molecules       Date:  2020-11-12       Impact factor: 4.411

  7 in total

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