Literature DB >> 29644258

CRISPR-mediated Tagging with BirA Allows Proximity Labeling in Toxoplasma gondii.

Shaojun Long1, Kevin M Brown1, L David Sibley1.   

Abstract

Defining protein interaction networks can provide key insights into how protein complexes govern complex biological problems. Here we define a method for proximity based labeling using permissive biotin ligase to define protein networks in the intracellular parasite Toxoplasma gondii. When combined with CRISPR/Cas9 based tagging, this method provides a robust approach to defining protein networks. This approach detects interaction within intact cells, it is applicable to both soluble and insoluble components, including large proteins complexes that interact with the cytoskeleton and unique microtubule organizing center that comprises the apical complex in apicomplexan parasites.

Entities:  

Keywords:  BioID; CRISPR; Mass spectrometry; Protein interaction network; Proximity labeling; Proximity ligation

Year:  2018        PMID: 29644258      PMCID: PMC5890295          DOI: 10.21769/BioProtoc.2768

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  18 in total

1.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Authors:  Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

2.  SFINX: Straightforward Filtering Index for Affinity Purification-Mass Spectrometry Data Analysis.

Authors:  Kevin Titeca; Pieter Meysman; Kris Gevaert; Jan Tavernier; Kris Laukens; Lennart Martens; Sven Eyckerman
Journal:  J Proteome Res       Date:  2015-12-17       Impact factor: 4.466

3.  Development of CRISPR/Cas9 for Efficient Genome Editing in Toxoplasma gondii.

Authors:  Bang Shen; Kevin Brown; Shaojun Long; L David Sibley
Journal:  Methods Mol Biol       Date:  2017

4.  Probing nuclear pore complex architecture with proximity-dependent biotinylation.

Authors:  Dae In Kim; K C Birendra; Wenhong Zhu; Khatereh Motamedchaboki; Valérie Doye; Kyle J Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-03       Impact factor: 11.205

5.  Direct observation of individual endogenous protein complexes in situ by proximity ligation.

Authors:  Ola Söderberg; Mats Gullberg; Malin Jarvius; Karin Ridderstråle; Karl-Johan Leuchowius; Jonas Jarvius; Kenneth Wester; Per Hydbring; Fuad Bahram; Lars-Gunnar Larsson; Ulf Landegren
Journal:  Nat Methods       Date:  2006-10-29       Impact factor: 28.547

6.  Transient transfection and expression in the obligate intracellular parasite Toxoplasma gondii.

Authors:  D Soldati; J C Boothroyd
Journal:  Science       Date:  1993-04-16       Impact factor: 47.728

7.  Novel components of the Toxoplasma inner membrane complex revealed by BioID.

Authors:  Allan L Chen; Elliot W Kim; Justin Y Toh; Ajay A Vashisht; Andrew Q Rashoff; Christina Van; Amy S Huang; Andy S Moon; Hannah N Bell; Laurent A Bentolila; James A Wohlschlegel; Peter J Bradley
Journal:  MBio       Date:  2015-02-17       Impact factor: 7.867

8.  Calmodulin-like proteins localized to the conoid regulate motility and cell invasion by Toxoplasma gondii.

Authors:  Shaojun Long; Kevin M Brown; Lisa L Drewry; Bryan Anthony; Isabelle Q H Phan; L David Sibley
Journal:  PLoS Pathog       Date:  2017-05-05       Impact factor: 6.823

9.  Conditional Knockdown of Proteins Using Auxin-inducible Degron (AID) Fusions in Toxoplasma gondii.

Authors:  Kevin M Brown; Shaojun Long; L David Sibley
Journal:  Bio Protoc       Date:  2018-02-20

10.  Phosphorylation of a Myosin Motor by TgCDPK3 Facilitates Rapid Initiation of Motility during Toxoplasma gondii egress.

Authors:  Rajshekhar Y Gaji; Derrick E Johnson; Moritz Treeck; Mu Wang; Andy Hudmon; Gustavo Arrizabalaga
Journal:  PLoS Pathog       Date:  2015-11-06       Impact factor: 6.823

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  10 in total

1.  BioID as a Tool for Protein-Proximity Labeling in Living Cells.

Authors:  Rhiannon M Sears; Danielle G May; Kyle J Roux
Journal:  Methods Mol Biol       Date:  2019

2.  BioID: A Method to Generate a History of Protein Associations.

Authors:  Danielle G May; Kyle J Roux
Journal:  Methods Mol Biol       Date:  2019-05-24

Review 3.  Proximity Dependent Biotinylation: Key Enzymes and Adaptation to Proteomics Approaches.

Authors:  Payman Samavarchi-Tehrani; Reuben Samson; Anne-Claude Gingras
Journal:  Mol Cell Proteomics       Date:  2020-03-03       Impact factor: 5.911

4.  SpyChIP identifies cell type-specific transcription factor occupancy from complex tissues.

Authors:  Siqian Feng; Richard S Mann
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-13       Impact factor: 12.779

5.  The Dually Localized EF-Hand Domain-Containing Protein TgEFP1 Regulates the Lytic Cycle of Toxoplasma gondii.

Authors:  Noopur Dave; Kaice LaFavers; Gustavo Arrizabalaga
Journal:  Cells       Date:  2022-05-21       Impact factor: 7.666

Review 6.  Proximity-dependent labeling methods for proteomic profiling in living cells: An update.

Authors:  Justin A Bosch; Chiao-Lin Chen; Norbert Perrimon
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-09-10       Impact factor: 5.814

Review 7.  Recent advances in proximity-based labeling methods for interactome mapping.

Authors:  Laura Trinkle-Mulcahy
Journal:  F1000Res       Date:  2019-01-31

Review 8.  Applications of CRISPR-Cas Technologies to Proteomics.

Authors:  Georgii Dolgalev; Ekaterina Poverennaya
Journal:  Genes (Basel)       Date:  2021-11-12       Impact factor: 4.096

9.  Essential function of the alveolin network in the subpellicular microtubules and conoid assembly in Toxoplasma gondii.

Authors:  Nicolò Tosetti; Nicolas Dos Santos Pacheco; Eloïse Bertiaux; Bohumil Maco; Lorène Bournonville; Virginie Hamel; Paul Guichard; Dominique Soldati-Favre
Journal:  Elife       Date:  2020-05-07       Impact factor: 8.140

10.  Toxoplasma gondii SAG1 targeting host cell S100A6 for parasite invasion and host immunity.

Authors:  Li-Juan Zhou; Jiao Peng; Min Chen; Li-Jie Yao; Wei Hao Zou; Cynthia Y He; Hong-Juan Peng
Journal:  iScience       Date:  2021-11-26
  10 in total

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