Literature DB >> 29642014

A Universal Approach to Optimize the Folding and Stability of Prefusion-Closed HIV-1 Envelope Trimers.

Lucy Rutten1, Yen-Ting Lai2, Sven Blokland1, Daphne Truan1, Ilona J M Bisschop1, Nika M Strokappe1, Annemart Koornneef1, Danielle van Manen1, Gwo-Yu Chuang2, S Katie Farney2, Hanneke Schuitemaker1, Peter D Kwong3, Johannes P M Langedijk4.   

Abstract

The heavily glycosylated native-like envelope (Env) trimer of HIV-1 is expected to have low immunogenicity, whereas misfolded forms are often highly immunogenic. High-quality correctly folded Envs may therefore be critical for developing a vaccine that induces broadly neutralizing antibodies. Moreover, the high variability of Env may require immunizations with multiple Envs. Here, we report a universal strategy that provides for correctly folded Env trimers of high quality and yield through a repair-and-stabilize approach. In the repair stage, we utilized a consensus strategy that substituted rare strain-specific residues with more prevalent ones. The stabilization stage involved structure-based design and experimental assessment confirmed by crystallographic feedback. Regions important for the refolding of Env were targeted for stabilization. Notably, the α9-helix and an intersubunit β sheet proved to be critical for trimer stability. Our approach provides a means to produce prefusion-closed Env trimers from diverse HIV-1 strains, a substantial advance for vaccine development.
Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  ConC_base; HIV; SOSIP; X-ray structure; chronic; envelope protein; hybrid sheet; stabilization; transmitted/founder; vaccine

Mesh:

Substances:

Year:  2018        PMID: 29642014      PMCID: PMC6010203          DOI: 10.1016/j.celrep.2018.03.061

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  46 in total

1.  Crystal structure of a soluble cleaved HIV-1 envelope trimer.

Authors:  Jean-Philippe Julien; Albert Cupo; Devin Sok; Robyn L Stanfield; Dmitry Lyumkis; Marc C Deller; Per-Johan Klasse; Dennis R Burton; Rogier W Sanders; John P Moore; Andrew B Ward; Ian A Wilson
Journal:  Science       Date:  2013-10-31       Impact factor: 47.728

2.  Immunogenicity and structures of a rationally designed prefusion MERS-CoV spike antigen.

Authors:  Jesper Pallesen; Nianshuang Wang; Kizzmekia S Corbett; Daniel Wrapp; Robert N Kirchdoerfer; Hannah L Turner; Christopher A Cottrell; Michelle M Becker; Lingshu Wang; Wei Shi; Wing-Pui Kong; Erica L Andres; Arminja N Kettenbach; Mark R Denison; James D Chappell; Barney S Graham; Andrew B Ward; Jason S McLellan
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

3.  A recombinant human immunodeficiency virus type 1 envelope glycoprotein complex stabilized by an intermolecular disulfide bond between the gp120 and gp41 subunits is an antigenic mimic of the trimeric virion-associated structure.

Authors:  J M Binley; R W Sanders; B Clas; N Schuelke; A Master; Y Guo; F Kajumo; D J Anselma; P J Maddon; W C Olson; J P Moore
Journal:  J Virol       Date:  2000-01       Impact factor: 5.103

4.  Structure-Based Design of a Soluble Prefusion-Closed HIV-1 Env Trimer with Reduced CD4 Affinity and Improved Immunogenicity.

Authors:  Gwo-Yu Chuang; Hui Geng; Marie Pancera; Kai Xu; Cheng Cheng; Priyamvada Acharya; Michael Chambers; Aliaksandr Druz; Yaroslav Tsybovsky; Timothy G Wanninger; Yongping Yang; Nicole A Doria-Rose; Ivelin S Georgiev; Jason Gorman; M Gordon Joyce; Sijy O'Dell; Tongqing Zhou; Adrian B McDermott; John R Mascola; Peter D Kwong
Journal:  J Virol       Date:  2017-04-28       Impact factor: 5.103

5.  Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility.

Authors:  Marie Pancera; Shahzad Majeed; Yih-En Andrew Ban; Lei Chen; Chih-chin Huang; Leopold Kong; Young Do Kwon; Jonathan Stuckey; Tongqing Zhou; James E Robinson; William R Schief; Joseph Sodroski; Richard Wyatt; Peter D Kwong
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-28       Impact factor: 11.205

6.  Improving the Expression and Purification of Soluble, Recombinant Native-Like HIV-1 Envelope Glycoprotein Trimers by Targeted Sequence Changes.

Authors:  Rajesh P Ringe; Gabriel Ozorowski; Anila Yasmeen; Albert Cupo; Victor M Cruz Portillo; Pavel Pugach; Michael Golabek; Kimmo Rantalainen; Lauren G Holden; Christopher A Cottrell; Ian A Wilson; Rogier W Sanders; Andrew B Ward; P J Klasse; John P Moore
Journal:  J Virol       Date:  2017-05-26       Impact factor: 5.103

7.  Design and structure of two HIV-1 clade C SOSIP.664 trimers that increase the arsenal of native-like Env immunogens.

Authors:  Jean-Philippe Julien; Jeong Hyun Lee; Gabriel Ozorowski; Yuanzi Hua; Alba Torrents de la Peña; Steven W de Taeye; Travis Nieusma; Albert Cupo; Anila Yasmeen; Michael Golabek; Pavel Pugach; P J Klasse; John P Moore; Rogier W Sanders; Andrew B Ward; Ian A Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

8.  HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck.

Authors:  Jonathan M Carlson; Malinda Schaefer; Daniela C Monaco; Rebecca Batorsky; Daniel T Claiborne; Jessica Prince; Martin J Deymier; Zachary S Ende; Nichole R Klatt; Charles E DeZiel; Tien-Ho Lin; Jian Peng; Aaron M Seese; Roger Shapiro; John Frater; Thumbi Ndung'u; Jianming Tang; Paul Goepfert; Jill Gilmour; Matt A Price; William Kilembe; David Heckerman; Philip J R Goulder; Todd M Allen; Susan Allen; Eric Hunter
Journal:  Science       Date:  2014-07-10       Impact factor: 47.728

9.  Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding site.

Authors:  Barna Dey; Krisha Svehla; Ling Xu; Dianne Wycuff; Tongqing Zhou; Gerald Voss; Adhuna Phogat; Bimal K Chakrabarti; Yuxing Li; George Shaw; Peter D Kwong; Gary J Nabel; John R Mascola; Richard T Wyatt
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

10.  Uncleaved prefusion-optimized gp140 trimers derived from analysis of HIV-1 envelope metastability.

Authors:  Leopold Kong; Linling He; Natalia de Val; Nemil Vora; Charles D Morris; Parisa Azadnia; Devin Sok; Bin Zhou; Dennis R Burton; Andrew B Ward; Ian A Wilson; Jiang Zhu
Journal:  Nat Commun       Date:  2016-06-28       Impact factor: 14.919

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  37 in total

1.  Conformational Differences between Functional Human Immunodeficiency Virus Envelope Glycoprotein Trimers and Stabilized Soluble Trimers.

Authors:  Luis R Castillo-Menendez; Hanh T Nguyen; Joseph Sodroski
Journal:  J Virol       Date:  2019-01-17       Impact factor: 5.103

2.  A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence.

Authors:  Sarah Welbourn; Srirupa Chakraborty; Jie E Yang; Anne S Gleinich; Sailaja Gangadhara; Salar Khan; Courtney Ferrebee; Bhrugu Yagnik; Samantha Burton; Tysheena Charles; S Abigail Smith; Danielle Williams; Rohini Mopuri; Amit A Upadhyay; Justin Thompson; Matt A Price; Shiyu Wang; Zhaohui Qin; Xiaoying Shen; LaTonya D Williams; Nathan Eisel; Tiffany Peters; Lu Zhang; William Kilembe; Etienne Karita; Georgia D Tomaras; Steven E Bosinger; Rama R Amara; Parastoo Azadi; Elizabeth R Wright; Sandrasegaram Gnanakaran; Cynthia A Derdeyn
Journal:  PLoS Pathog       Date:  2022-05-03       Impact factor: 6.823

3.  Structural Design and Assessing of Recombinantly Expressed African Swine Fever Virus p72 Trimer in Saccharomyces cerevisiae.

Authors:  Kaiwen Meng; Yueping Zhang; Qi Liu; Yangnan Huyan; Wenzhuang Zhu; Ye Xiang; Geng Meng
Journal:  Front Microbiol       Date:  2022-06-14       Impact factor: 6.064

4.  Sequential immunization of macaques elicits heterologous neutralizing antibodies targeting the V3-glycan patch of HIV-1 Env.

Authors:  Amelia Escolano; Harry B Gristick; Rajeev Gautam; Andrew T DeLaitsch; Morgan E Abernathy; Zhi Yang; Haoqing Wang; Magnus A G Hoffmann; Yoshiaki Nishimura; Zijun Wang; Nicholas Koranda; Leesa M Kakutani; Han Gao; Priyanthi N P Gnanapragasam; Henna Raina; Ana Gazumyan; Melissa Cipolla; Thiago Y Oliveira; Victor Ramos; Darrell J Irvine; Murillo Silva; Anthony P West; Jennifer R Keeffe; Christopher O Barnes; Michael S Seaman; Michel C Nussenzweig; Malcolm A Martin; Pamela J Bjorkman
Journal:  Sci Transl Med       Date:  2021-11-24       Impact factor: 19.319

5.  Development of a 3Mut-Apex-Stabilized Envelope Trimer That Expands HIV-1 Neutralization Breadth When Used To Boost Fusion Peptide-Directed Vaccine-Elicited Responses.

Authors:  Gwo-Yu Chuang; Yen-Ting Lai; Jeffrey C Boyington; Cheng Cheng; Hui Geng; Sandeep Narpala; Reda Rawi; Stephen D Schmidt; Yaroslav Tsybovsky; Raffaello Verardi; Kai Xu; Yongping Yang; Baoshan Zhang; Michael Chambers; Anita Changela; Angela R Corrigan; Rui Kong; Adam S Olia; Li Ou; Edward K Sarfo; Shuishu Wang; Winston Wu; Nicole A Doria-Rose; Adrian B McDermott; John R Mascola; Peter D Kwong
Journal:  J Virol       Date:  2020-06-16       Impact factor: 5.103

Review 6.  Immune Correlate-Guided HIV Vaccine Design.

Authors:  Galit Alter; Dan Barouch
Journal:  Cell Host Microbe       Date:  2018-07-11       Impact factor: 21.023

7.  Automated Design by Structure-Based Stabilization and Consensus Repair to Achieve Prefusion-Closed Envelope Trimers in a Wide Variety of HIV Strains.

Authors:  Reda Rawi; Lucy Rutten; Yen-Ting Lai; Adam S Olia; Sven Blokland; Jarek Juraszek; Chen-Hsiang Shen; Yaroslav Tsybovsky; Raffaello Verardi; Yongping Yang; Baoshan Zhang; Tongqing Zhou; Gwo-Yu Chuang; Peter D Kwong; Johannes P M Langedijk
Journal:  Cell Rep       Date:  2020-11-24       Impact factor: 9.423

8.  Subnanometer structures of HIV-1 envelope trimers on aldrithiol-2-inactivated virus particles.

Authors:  Ze Li; Wenwei Li; Maolin Lu; Julian Bess; Cara W Chao; Jason Gorman; Daniel S Terry; Baoshan Zhang; Tongqing Zhou; Scott C Blanchard; Peter D Kwong; Jeffrey D Lifson; Walther Mothes; Jun Liu
Journal:  Nat Struct Mol Biol       Date:  2020-06-29       Impact factor: 15.369

9.  A non-affinity purification process for GMP production of prefusion-closed HIV-1 envelope trimers from clades A and C for clinical evaluation.

Authors:  Krishana Gulla; Nicole Cibelli; Jonathan W Cooper; Haley C Fuller; Zachary Schneiderman; Sara Witter; Yaqiu Zhang; Anita Changela; Hui Geng; Christian Hatcher; Sandeep Narpala; Yaroslav Tsybovsky; Baoshan Zhang; Adrian B McDermott; Peter D Kwong; Daniel B Gowetski
Journal:  Vaccine       Date:  2021-05-18       Impact factor: 4.169

Review 10.  HIV-1 Envelope Conformation, Allostery, and Dynamics.

Authors:  Ashley Lauren Bennett; Rory Henderson
Journal:  Viruses       Date:  2021-05-07       Impact factor: 5.048

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