Literature DB >> 25013080

HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck.

Jonathan M Carlson1, Malinda Schaefer2, Daniela C Monaco2, Rebecca Batorsky3, Daniel T Claiborne2, Jessica Prince2, Martin J Deymier2, Zachary S Ende2, Nichole R Klatt2, Charles E DeZiel4, Tien-Ho Lin4, Jian Peng4, Aaron M Seese3, Roger Shapiro5, John Frater6, Thumbi Ndung'u7, Jianming Tang8, Paul Goepfert8, Jill Gilmour9, Matt A Price10, William Kilembe11, David Heckerman12, Philip J R Goulder13, Todd M Allen14, Susan Allen15, Eric Hunter16.   

Abstract

Heterosexual transmission of HIV-1 typically results in one genetic variant establishing systemic infection. We compared, for 137 linked transmission pairs, the amino acid sequences encoded by non-envelope genes of viruses in both partners and demonstrate a selection bias for transmission of residues that are predicted to confer increased in vivo fitness on viruses in the newly infected, immunologically naïve recipient. Although tempered by transmission risk factors, such as donor viral load, genital inflammation, and recipient gender, this selection bias provides an overall transmission advantage for viral quasispecies that are dominated by viruses with high in vivo fitness. Thus, preventative or therapeutic approaches that even marginally reduce viral fitness may lower the overall transmission rates and offer long-term benefits even upon successful transmission.
Copyright © 2014, American Association for the Advancement of Science.

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Year:  2014        PMID: 25013080      PMCID: PMC4289910          DOI: 10.1126/science.1254031

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  68 in total

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Authors:  Claudia Cicala; Elena Martinelli; Jonathan P McNally; Diana J Goode; Ravindra Gopaul; Joseph Hiatt; Katija Jelicic; Shyamasundaran Kottilil; Katilyn Macleod; Angeline O'Shea; Nikita Patel; Donald Van Ryk; Danlan Wei; Massimiliano Pascuccio; Ling Yi; Lyle McKinnon; Preson Izulla; Joshua Kimani; Rupert Kaul; Anthony S Fauci; James Arthos
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-20       Impact factor: 11.205

2.  Crystal structure of the conserved core of HIV-1 Nef complexed with a Src family SH3 domain.

Authors:  C H Lee; K Saksela; U A Mirza; B T Chait; J Kuriyan
Journal:  Cell       Date:  1996-06-14       Impact factor: 41.582

3.  Rapid HIV testing and counseling for voluntary testing centers in Africa.

Authors:  S L McKenna; G K Muyinda; D Roth; M Mwali; N Ng'andu; A Myrick; C Luo; F H Priddy; V M Hall; A A von Lieven; J R Sabatino; K Mark; S A Allen
Journal:  AIDS       Date:  1997-09       Impact factor: 4.177

4.  Selection, transmission, and reversion of an antigen-processing cytotoxic T-lymphocyte escape mutation in human immunodeficiency virus type 1 infection.

Authors:  Todd M Allen; Marcus Altfeld; Xu G Yu; Kristin M O'Sullivan; Mathias Lichterfeld; Sylvie Le Gall; Mina John; Bianca R Mothe; Paul K Lee; Elizabeth T Kalife; Daniel E Cohen; Kenneth A Freedberg; Daryld A Strick; Mary N Johnston; Alessandro Sette; Eric S Rosenberg; Simon A Mallal; Philip J R Goulder; Christian Brander; Bruce D Walker
Journal:  J Virol       Date:  2004-07       Impact factor: 5.103

5.  Human leukocyte antigen class I genotypes in relation to heterosexual HIV type 1 transmission within discordant couples.

Authors:  Jianming Tang; Wenshuo Shao; Yun Joo Yoo; Ilene Brill; Joseph Mulenga; Susan Allen; Eric Hunter; Richard A Kaslow
Journal:  J Immunol       Date:  2008-08-15       Impact factor: 5.422

6.  Central role of reverting mutations in HLA associations with human immunodeficiency virus set point.

Authors:  Philippa C Matthews; Andrew Prendergast; Alasdair Leslie; Hayley Crawford; Rebecca Payne; Christine Rousseau; Morgane Rolland; Isobella Honeyborne; Jonathan Carlson; Carl Kadie; Christian Brander; Karen Bishop; Nonkululeko Mlotshwa; James I Mullins; Hoosen Coovadia; Thumbi Ndung'u; Bruce D Walker; David Heckerman; Philip J R Goulder
Journal:  J Virol       Date:  2008-07-02       Impact factor: 5.103

7.  Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing.

Authors:  Jesus F Salazar-Gonzalez; Elizabeth Bailes; Kimmy T Pham; Maria G Salazar; M Brad Guffey; Brandon F Keele; Cynthia A Derdeyn; Paul Farmer; Eric Hunter; Susan Allen; Olivier Manigart; Joseph Mulenga; Jeffrey A Anderson; Ronald Swanstrom; Barton F Haynes; Gayathri S Athreya; Bette T M Korber; Paul M Sharp; George M Shaw; Beatrice H Hahn
Journal:  J Virol       Date:  2008-02-06       Impact factor: 5.103

8.  De novo assembly of highly diverse viral populations.

Authors:  Xiao Yang; Patrick Charlebois; Sante Gnerre; Matthew G Coole; Niall J Lennon; Joshua Z Levin; James Qu; Elizabeth M Ryan; Michael C Zody; Matthew R Henn
Journal:  BMC Genomics       Date:  2012-09-13       Impact factor: 3.969

9.  Disparate associations of HLA class I markers with HIV-1 acquisition and control of viremia in an African population.

Authors:  Wei Song; Dongning He; Ilene Brill; Rakhi Malhotra; Joseph Mulenga; Susan Allen; Eric Hunter; Jianming Tang; Richard A Kaslow
Journal:  PLoS One       Date:  2011-08-17       Impact factor: 3.240

10.  Relative resistance of HIV-1 founder viruses to control by interferon-alpha.

Authors:  Angharad E Fenton-May; Oliver Dibben; Tanja Emmerich; Haitao Ding; Katja Pfafferott; Marlen M Aasa-Chapman; Pierre Pellegrino; Ian Williams; Myron S Cohen; Feng Gao; George M Shaw; Beatrice H Hahn; Christina Ochsenbauer; John C Kappes; Persephone Borrow
Journal:  Retrovirology       Date:  2013-12-03       Impact factor: 4.602

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  148 in total

1.  SPMM: estimating infection duration of multivariant HIV-1 infections.

Authors:  Tanzy M T Love; Sung Yong Park; Elena E Giorgi; Wendy J Mack; Alan S Perelson; Ha Youn Lee
Journal:  Bioinformatics       Date:  2015-12-31       Impact factor: 6.937

Review 2.  HIV-specific CD8⁺ T cells and HIV eradication.

Authors:  R Brad Jones; Bruce D Walker
Journal:  J Clin Invest       Date:  2016-01-05       Impact factor: 14.808

3.  Mother-to-Child HIV Transmission Bottleneck Selects for Consensus Virus with Lower Gag-Protease-Driven Replication Capacity.

Authors:  Vanessa L Naidoo; Jaclyn K Mann; Christie Noble; Emily Adland; Jonathan M Carlson; Jake Thomas; Chanson J Brumme; Christina F Thobakgale-Tshabalala; Zabrina L Brumme; Mark A Brockman; Philip J R Goulder; Thumbi Ndung'u
Journal:  J Virol       Date:  2017-08-10       Impact factor: 5.103

4.  Replication Capacity of Viruses from Acute Infection Drives HIV-1 Disease Progression.

Authors:  Philippe Selhorst; Carina Combrinck; Nonkululeko Ndabambi; Sherazaan D Ismail; Melissa-Rose Abrahams; Miguel Lacerda; Natasha Samsunder; Nigel Garrett; Quarraisha Abdool Karim; Salim S Abdool Karim; Carolyn Williamson
Journal:  J Virol       Date:  2017-03-29       Impact factor: 5.103

5.  Dynamics and Correlates of CD8 T-Cell Counts in Africans with Primary Human Immunodeficiency Virus Type 1 Infection.

Authors:  Heather A Prentice; Hailin Lu; Matthew A Price; Anatoli Kamali; Etienne Karita; Shabir Lakhi; Eduard J Sanders; Omu Anzala; Susan Allen; Paul A Goepfert; Eric Hunter; Jill Gilmour; Jianming Tang
Journal:  J Virol       Date:  2016-10-28       Impact factor: 5.103

6.  Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.

Authors:  Shuntai Zhou; Corbin Jones; Piotr Mieczkowski; Ronald Swanstrom
Journal:  J Virol       Date:  2015-06-03       Impact factor: 5.103

Review 7.  Biologic interactions between HSV-2 and HIV-1 and possible implications for HSV vaccine development.

Authors:  Joshua T Schiffer; Sami L Gottlieb
Journal:  Vaccine       Date:  2017-09-25       Impact factor: 3.641

8.  Characterization of the Transmitted Virus in an Ongoing HIV-1 Epidemic Driven by Injecting Drug Use.

Authors:  Elena Dukhovlinova; Alexey Masharsky; Aleksandra Vasileva; Alessandro Porrello; Shuntai Zhou; Olga Toussova; Sergei Verevochkin; Ekaterina Akulova; Dmitrij Frishman; David Montefiori; Celia Labranche; Irving Hoffman; William Miller; Myron S Cohen; Andrei P Kozlov; Ronald Swanstrom
Journal:  AIDS Res Hum Retroviruses       Date:  2018-07-30       Impact factor: 2.205

9.  Early evolution of human leucocyte antigen-associated escape mutations in variable Gag proteins predicts CD4+ decline in HIV-1 subtype C-infected women.

Authors:  Denis R Chopera; Roman Ntale; Nonkululeko Ndabambi; Nigel Garrett; Clive M Gray; David Matten; Quarraisha Abdool Karim; Salim Abdool Karim; Carolyn Williamson
Journal:  AIDS       Date:  2017-01-14       Impact factor: 4.177

10.  Cervicovaginal Inflammation Facilitates Acquisition of Less Infectious HIV Variants.

Authors:  Philippe Selhorst; Lindi Masson; Sherazaan D Ismail; Natasha Samsunder; Nigel Garrett; Leila E Mansoor; Quarraisha Abdool Karim; Salim S Abdool Karim; Jo-Ann S Passmore; Carolyn Williamson
Journal:  Clin Infect Dis       Date:  2016-09-29       Impact factor: 9.079

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