| Literature DB >> 29614061 |
Michał Jóźwiak1,2,3, Karolina Stępień4,5, Małgorzata Wrzosek6,7, Wioletta Olejarz8,9, Grażyna Kubiak-Tomaszewska10, Anna Filipowska11, Wojciech Filipowski12, Marta Struga13,14.
Abstract
Thirty new derivatives of palmitic acid were efficiently synthesized. All obtained compounds can be divided into three groups of derivatives: Thiosemicarbazides (compounds 1-10), 1,2,4-triazoles (compounds 1a-10a) and 1,3,4-thiadiazoles (compounds 1b-10b) moieties. ¹H-NMR, 13C-NMR and MS methods were used to confirm the structure of derivatives. All obtained compounds were tested in vitro against a number of microorganisms, including Gram-positive cocci, Gram-negative rods and Candida albicans. Compounds 4, 5, 6, 8 showed significant inhibition against C. albicans. The range of MIC values was 50-1.56 μg/mL. The halogen atom, especially at the 3rd position of the phenyl group was significantly important for antifungal activity. The biological activity against Candida albicans and selected molecular descriptors were used as a basis for QSAR models, that have been determined by means of multiple linear regression. The models have been validated by means of the Leave-One-Out Cross Validation. The obtained QSAR models were characterized by high determination coefficients and good prediction power.Entities:
Keywords: 1,2,4-triazoles; 1,3,4-thiadiazoles; antimicrobial activity; palmitic acid derivatives; quantitative structure-activity relationship; thiosemicarbazides
Mesh:
Substances:
Year: 2018 PMID: 29614061 PMCID: PMC6017783 DOI: 10.3390/molecules23040822
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Scheme 1Synthesis route for derivatives of palmitic acid thiosemicarbazides. Reagents and conditions: (a) NH2NH2 80%, EtOH, rt. 2 h (b) appropriate isothiocyanate, acetonitrile, reflux, 6 h (c) 2% NaOH, reflux (d) H2SO4(conc.).
Antifungal activity against Candida albicans stains (MIC values in μg/mL).
| Compound | MIC/μg/mL | |||
|---|---|---|---|---|
| 12.5 | 100 | >100 | >100 | |
| 1.56 | 100 | >100 | 25 | |
| 1.56 | 100 | 50 | 12.5 | |
| 1.56 | 50 | 12.5 | 6.25 | |
| 1.56 | 1.56 | 1.56 | 1.56 | |
| 1.56 | 25 | 3.125 | 3.125 | |
| 1.56 | >100 | 25 | 25 | |
| 1.56 | 25 | 12.5 | 6.25 | |
| 1.56 | 50 | 50 | 50 | |
| 12.5 | 25 | 25 | 12.5 | |
| 50 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| 12.5 | 25 | 100 | 25 | |
| 12.5 | 50 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| 100 | 100 | 100 | >100 | |
| 100 | >100 | >100 | >100 | |
| 50 | 100 | 100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| >100 | >100 | >100 | >100 | |
| 0.25–0.125 | 0.25–0.125 | 0.25–0.125 | 0.25–0.125 | |
* Ref.—Fluconazole.
Formulas describing the relationship of activity against Candida albicans ATCC 10231, Candida albicans clinical isolate 18 and molecular descriptors (training set = 80% of whole dataset, test set = 20% of whole dataset).
| C. albicans Strain | QSAR Equation | Modeling ntr = 24 | Internal Validation | External Validation ntest = 6 | Golbraikh&Tropsha |
|---|---|---|---|---|---|
| Candida albicans ATCC 10231 | log(1/MICC. alb.ATCC10231) = 0.0001(±0.00005)EIA + 0.19 (±0.05)Rf − 0.039(±0.006)HF − 11.84(±3.9) | R = 0.889 | Q2LOO = 0.733 | Q2(F1) = 0.890 | k = 1.013 |
| R2 = 0.790 | Q2(F2) = 0.890 | ||||
| R2adj.= 0.758 | Q2(F3) = 0.867 | ||||
| F = 25.1 | RMSEext = 0.321 | ||||
| RMSEtr = 0.419 | Δr2m = 0.111 | ||||
| log(1/MICC. alb.ATCC10231) = −0.11(±0.01)logP2 + 0.00090(±0.0001)Rf2 + 0.030(±0.01)µ2 − 8.96(±1.8) | R = 0.901 | Q2LOO = 0.750 | Q2(F1) = 0.879 | k = 1.005 | |
| R2 = 0.812 | Q2(F2) = 0.879 | ||||
| R2adj.= 0.784 | Q2(F3) = 0.904 | ||||
| F = 28.8 | RMSEext = 0.208 | ||||
| RMSEtr = 0.419 | Δr2m = 0.145 | ||||
| Candida albicans clinical isolate 18 | log(1/MICC. alb.clin.18) = −0.003(±0.0007)logP3 + 0.0003(±0.0001)Rf2 + 3.9·10−12(±1·10−12)ICC2 − 7.89 (±1.1) | R = 0.918 | Q2LOO = 0.774 | Q2(F1) = 0.879 | k = 1.005 |
| R2 = 0.843 | Q2(F2) = 0.879 | ||||
| R2adj.= 0.819 | Q2(F3) = 0.904 | ||||
| F = 35.7 | RMSEext = 0.208 | ||||
| RMSEtr = 0.292 | Δr2m = 0.095 | ||||
| log(1/MICC. alb.clin.18) = 4.9·10−12(±7·10-13)EE2 − 6.94(±0.7) | R = 0.831 | Q2LOO = 0.673 | Q2(F1) = 0.640 | k = 1.009 | |
| R2 = 0.691 | Q2(F2) = 0.641 | ||||
| R2adj.= 0.677 | Q2(F3) = 0.712 | ||||
| F = 49.2 | RMSEext = 0.360 | ||||
| RMSEtr = 0.390 | Δr2m = 0.064 |
ntr—the number of samples in training set, R—multilinear correlation coefficient, R2—determination coefficient, R2adj—adjusted determination coefficient, RMSEtr—root mean square error in fitting, F—F-value; R2Yscr—average R2 of 25 random models, Q2Yscr—average R2 of 25 random models, , Q2LOO—determination coefficient of LOO validation, ntest—the number of samples in test set, RMSEext—root mean square error in test set, Q2(F1), Q2(F2) and Q2(F3)—variance explained in test set, concordance correlation coefficient; and ∆r2m—average and delta r2m values, respectively (criteria described by Roy), k and k′—slopes of the regression line over external data, R20 and R’20—R2 values in Golbraikh and Tropsha criteria.
Figure 1Correlation of activity against Candida albicans clinical isolate 18 and logP3, Rf2, ICC2. Dashed lines mark the area of predictability of the received models, which are described by the equations featured above the graphs. ▪—test set, ◦—training set.
Figure 2Correlation of activity against Candida albicans ATCC 10231 and logP2, RF2, µ2. Dashed lines mark the area of predictability of the received models, which are described by the equations featured above the graphs. ▪—test set, ◦—training set.
Figure 3Dendrogram presenting the similarity of compounds in terms of their biological activity against the tested fungal strains: Candida albicans ATCC 10231, Candida albicans ATCC 3002, Candida albicans clinical isolate 26 and Candida albicans clinical isolate 18.