Literature DB >> 29600857

From "Cellular" RNA to "Smart" RNA: Multiple Roles of RNA in Genome Stability and Beyond.

Flavia Michelini1, Ameya P Jalihal2, Sofia Francia1,3, Chance Meers4, Zachary T Neeb5, Francesca Rossiello1, Ubaldo Gioia1, Julio Aguado1, Corey Jones-Weinert1, Brian Luke6,7, Giuseppe Biamonti3, Mariusz Nowacki5, Francesca Storici4, Piero Carninci8, Nils G Walter2, Fabrizio d'Adda di Fagagna1,3.   

Abstract

Coding for proteins has been considered the main function of RNA since the "central dogma" of biology was proposed. The discovery of noncoding transcripts shed light on additional roles of RNA, ranging from the support of polypeptide synthesis, to the assembly of subnuclear structures, to gene expression modulation. Cellular RNA has therefore been recognized as a central player in often unanticipated biological processes, including genomic stability. This ever-expanding list of functions inspired us to think of RNA as a "smart" phone, which has replaced the older obsolete "cellular" phone. In this review, we summarize the last two decades of advances in research on the interface between RNA biology and genome stability. We start with an account of the emergence of noncoding RNA, and then we discuss the involvement of RNA in DNA damage signaling and repair, telomere maintenance, and genomic rearrangements. We continue with the depiction of single-molecule RNA detection techniques, and we conclude by illustrating the possibilities of RNA modulation in hopes of creating or improving new therapies. The widespread biological functions of RNA have made this molecule a reoccurring theme in basic and translational research, warranting it the transcendence from classically studied "cellular" RNA to "smart" RNA.

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Year:  2018        PMID: 29600857     DOI: 10.1021/acs.chemrev.7b00487

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  28 in total

Review 1.  Life under the Microscope: Single-Molecule Fluorescence Highlights the RNA World.

Authors:  Sujay Ray; Julia R Widom; Nils G Walter
Journal:  Chem Rev       Date:  2018-01-24       Impact factor: 60.622

2.  Genetic Characterization of Three Distinct Mechanisms Supporting RNA-Driven DNA Repair and Modification Reveals Major Role of DNA Polymerase ζ.

Authors:  Chance Meers; Havva Keskin; Gabor Banyai; Olga Mazina; Taehwan Yang; Alli L Gombolay; Kuntal Mukherjee; Efiyenia I Kaparos; Gary Newnam; Alexander Mazin; Francesca Storici
Journal:  Mol Cell       Date:  2020-09-02       Impact factor: 17.970

Review 3.  Non-canonical DNA/RNA structures during Transcription-Coupled Double-Strand Break Repair: Roadblocks or Bona fide repair intermediates?

Authors:  Nadine Puget; Kyle M Miller; Gaëlle Legube
Journal:  DNA Repair (Amst)       Date:  2019-07-08

Review 4.  The Role of Transposable Elements of the Human Genome in Neuronal Function and Pathology.

Authors:  Ekaterina Chesnokova; Alexander Beletskiy; Peter Kolosov
Journal:  Int J Mol Sci       Date:  2022-05-23       Impact factor: 6.208

5.  In vivo Proximity Labeling of Nuclear and Nucleolar Proteins by a Stably Expressed, DNA Damage-Responsive NONO-APEX2 Fusion Protein.

Authors:  Barbara Trifault; Victoria Mamontova; Kaspar Burger
Journal:  Front Mol Biosci       Date:  2022-06-06

Review 6.  Telomere dysfunction in ageing and age-related diseases.

Authors:  Francesca Rossiello; Diana Jurk; João F Passos; Fabrizio d'Adda di Fagagna
Journal:  Nat Cell Biol       Date:  2022-02-14       Impact factor: 28.213

Review 7.  Regulatory and Functional Involvement of Long Non-Coding RNAs in DNA Double-Strand Break Repair Mechanisms.

Authors:  Angelos Papaspyropoulos; Nefeli Lagopati; Ioanna Mourkioti; Andriani Angelopoulou; Spyridon Kyriazis; Michalis Liontos; Vassilis Gorgoulis; Athanassios Kotsinas
Journal:  Cells       Date:  2021-06-15       Impact factor: 7.666

8.  Recent developments in the characterization of nucleic acid hybridization kinetics.

Authors:  Yuan-I Chen; Manasa P Sripati; Trung Duc Nguyen; Yin-Jui Chang; Yu-An Kuo; Soonwoo Hong; Hsin-Chih Yeh
Journal:  Curr Opin Biomed Eng       Date:  2021-06-12

Review 9.  The Ultimate (Mis)match: When DNA Meets RNA.

Authors:  Benoit Palancade; Rodney Rothstein
Journal:  Cells       Date:  2021-06-08       Impact factor: 7.666

10.  DHX9-dependent recruitment of BRCA1 to RNA promotes DNA end resection in homologous recombination.

Authors:  Prasun Chakraborty; Kevin Hiom
Journal:  Nat Commun       Date:  2021-07-05       Impact factor: 14.919

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