Literature DB >> 29581134

Data Analysis Strategies in Medical Imaging.

Chintan Parmar1, Joseph D Barry2, Ahmed Hosny1, John Quackenbush2,3, Hugo J W L Aerts4,5.   

Abstract

Radiographic imaging continues to be one of the most effective and clinically useful tools within oncology. Sophistication of artificial intelligence has allowed for detailed quantification of radiographic characteristics of tissues using predefined engineered algorithms or deep learning methods. Precedents in radiology as well as a wealth of research studies hint at the clinical relevance of these characteristics. However, critical challenges are associated with the analysis of medical imaging data. Although some of these challenges are specific to the imaging field, many others like reproducibility and batch effects are generic and have already been addressed in other quantitative fields such as genomics. Here, we identify these pitfalls and provide recommendations for analysis strategies of medical imaging data, including data normalization, development of robust models, and rigorous statistical analyses. Adhering to these recommendations will not only improve analysis quality but also enhance precision medicine by allowing better integration of imaging data with other biomedical data sources. Clin Cancer Res; 24(15); 3492-9. ©2018 AACR. ©2018 American Association for Cancer Research.

Entities:  

Year:  2018        PMID: 29581134      PMCID: PMC6082690          DOI: 10.1158/1078-0432.CCR-18-0385

Source DB:  PubMed          Journal:  Clin Cancer Res        ISSN: 1078-0432            Impact factor:   12.531


  40 in total

1.  Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations.

Authors:  M L Lee; F C Kuo; G A Whitmore; J Sklar
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

Review 2.  Microarray data normalization and transformation.

Authors:  John Quackenbush
Journal:  Nat Genet       Date:  2002-12       Impact factor: 38.330

3.  What do we know about ground-glass opacity nodules in the lung?

Authors:  Choon-Taek Lee
Journal:  Transl Lung Cancer Res       Date:  2015-10

Review 4.  Microarray data analysis: from disarray to consolidation and consensus.

Authors:  David B Allison; Xiangqin Cui; Grier P Page; Mahyar Sabripour
Journal:  Nat Rev Genet       Date:  2006-01       Impact factor: 53.242

Review 5.  Tackling the widespread and critical impact of batch effects in high-throughput data.

Authors:  Jeffrey T Leek; Robert B Scharpf; Héctor Corrada Bravo; David Simcha; Benjamin Langmead; W Evan Johnson; Donald Geman; Keith Baggerly; Rafael A Irizarry
Journal:  Nat Rev Genet       Date:  2010-09-14       Impact factor: 53.242

Review 6.  Radiomics: extracting more information from medical images using advanced feature analysis.

Authors:  Philippe Lambin; Emmanuel Rios-Velazquez; Ralph Leijenaar; Sara Carvalho; Ruud G P M van Stiphout; Patrick Granton; Catharina M L Zegers; Robert Gillies; Ronald Boellard; André Dekker; Hugo J W L Aerts
Journal:  Eur J Cancer       Date:  2012-01-16       Impact factor: 9.162

7.  Quantitative analysis of lesion morphology and texture features for diagnostic prediction in breast MRI.

Authors:  Ke Nie; Jeon-Hor Chen; Hon J Yu; Yong Chu; Orhan Nalcioglu; Min-Ying Su
Journal:  Acad Radiol       Date:  2008-12       Impact factor: 3.173

8.  Machine Learning methods for Quantitative Radiomic Biomarkers.

Authors:  Chintan Parmar; Patrick Grossmann; Johan Bussink; Philippe Lambin; Hugo J W L Aerts
Journal:  Sci Rep       Date:  2015-08-17       Impact factor: 4.379

9.  Pathologic stratification of operable lung adenocarcinoma using radiomics features extracted from dual energy CT images.

Authors:  Jung Min Bae; Ji Yun Jeong; Ho Yun Lee; Insuk Sohn; Hye Seung Kim; Ji Ye Son; O Jung Kwon; Joon Young Choi; Kyung Soo Lee; Young Mog Shim
Journal:  Oncotarget       Date:  2017-01-03

10.  Associations of Radiomic Data Extracted from Static and Respiratory-Gated CT Scans with Disease Recurrence in Lung Cancer Patients Treated with SBRT.

Authors:  Elizabeth Huynh; Thibaud P Coroller; Vivek Narayan; Vishesh Agrawal; John Romano; Idalid Franco; Chintan Parmar; Ying Hou; Raymond H Mak; Hugo J W L Aerts
Journal:  PLoS One       Date:  2017-01-03       Impact factor: 3.240

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  34 in total

Review 1.  Radiomics: from qualitative to quantitative imaging.

Authors:  William Rogers; Sithin Thulasi Seetha; Turkey A G Refaee; Relinde I Y Lieverse; Renée W Y Granzier; Abdalla Ibrahim; Simon A Keek; Sebastian Sanduleanu; Sergey P Primakov; Manon P L Beuque; Damiënne Marcus; Alexander M A van der Wiel; Fadila Zerka; Cary J G Oberije; Janita E van Timmeren; Henry C Woodruff; Philippe Lambin
Journal:  Br J Radiol       Date:  2020-02-26       Impact factor: 3.039

Review 2.  Understanding artificial intelligence based radiology studies: What is overfitting?

Authors:  Simukayi Mutasa; Shawn Sun; Richard Ha
Journal:  Clin Imaging       Date:  2020-04-23       Impact factor: 1.605

3.  Deep Learning Predicts Lung Cancer Treatment Response from Serial Medical Imaging.

Authors:  Yiwen Xu; Ahmed Hosny; Roman Zeleznik; Chintan Parmar; Thibaud Coroller; Idalid Franco; Raymond H Mak; Hugo J W L Aerts
Journal:  Clin Cancer Res       Date:  2019-04-22       Impact factor: 12.531

Review 4.  Radiomics in Breast Imaging from Techniques to Clinical Applications: A Review.

Authors:  Seung Hak Lee; Hyunjin Park; Eun Sook Ko
Journal:  Korean J Radiol       Date:  2020-07       Impact factor: 3.500

5.  Development of a Deep Learning Model to Identify Lymph Node Metastasis on Magnetic Resonance Imaging in Patients With Cervical Cancer.

Authors:  Qingxia Wu; Shuo Wang; Shuixing Zhang; Meiyun Wang; Yingying Ding; Jin Fang; Qingxia Wu; Wei Qian; Zhenyu Liu; Kai Sun; Yan Jin; He Ma; Jie Tian
Journal:  JAMA Netw Open       Date:  2020-07-01

Review 6.  Artificial intelligence in cancer imaging: Clinical challenges and applications.

Authors:  Wenya Linda Bi; Ahmed Hosny; Matthew B Schabath; Maryellen L Giger; Nicolai J Birkbak; Alireza Mehrtash; Tavis Allison; Omar Arnaout; Christopher Abbosh; Ian F Dunn; Raymond H Mak; Rulla M Tamimi; Clare M Tempany; Charles Swanton; Udo Hoffmann; Lawrence H Schwartz; Robert J Gillies; Raymond Y Huang; Hugo J W L Aerts
Journal:  CA Cancer J Clin       Date:  2019-02-05       Impact factor: 508.702

7.  Deep Learning to Assess Long-term Mortality From Chest Radiographs.

Authors:  Michael T Lu; Alexander Ivanov; Thomas Mayrhofer; Ahmed Hosny; Hugo J W L Aerts; Udo Hoffmann
Journal:  JAMA Netw Open       Date:  2019-07-03

8.  Machine-Learning-Derived Nomogram Based on 3D Radiomic Features and Clinical Factors Predicts Progression-Free Survival in Lung Adenocarcinoma.

Authors:  Guixue Liu; Zhihan Xu; Yaping Zhang; Beibei Jiang; Lu Zhang; Lingyun Wang; Geertruida H de Bock; Rozemarijn Vliegenthart; Xueqian Xie
Journal:  Front Oncol       Date:  2021-06-23       Impact factor: 6.244

Review 9.  Biomedical Image Classification in a Big Data Architecture Using Machine Learning Algorithms.

Authors:  Christian Tchito Tchapga; Thomas Attia Mih; Aurelle Tchagna Kouanou; Theophile Fozin Fonzin; Platini Kuetche Fogang; Brice Anicet Mezatio; Daniel Tchiotsop
Journal:  J Healthc Eng       Date:  2021-05-30       Impact factor: 2.682

10.  CT and MRI radiomics of bone and soft-tissue sarcomas: a systematic review of reproducibility and validation strategies.

Authors:  Salvatore Gitto; Renato Cuocolo; Domenico Albano; Francesco Morelli; Lorenzo Carlo Pescatori; Carmelo Messina; Massimo Imbriaco; Luca Maria Sconfienza
Journal:  Insights Imaging       Date:  2021-06-02
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