Literature DB >> 29541675

Simulated datasets for population dynamics of sickle cell anaemia.

S O Edeki1, O O Akanbi1,2.   

Abstract

The datasets contained in this article are simulated data with respect to Sickle Cell Anaemia (SCA) in order to examine the mathematical inheritance formation of the SCA disease. The simulation is done using Monte Carlos Simulation (MCS) Technique to complement the Physical Simulation Smith's Statistical (PSSS) package used as random number generator for birth simulation. One hundred and fifty-six (156) births for seven (7) generations were considered in the simulation alongside non-gestating reproductive females with fertile male adults while immigration and emigration are not permitted. These datasets can effectively serve as benchmarks for both health, and marital counselling institutions.

Entities:  

Keywords:  Data simulation; Population dynamics; Sickle cell anaemia

Year:  2017        PMID: 29541675      PMCID: PMC5847619          DOI: 10.1016/j.dib.2017.12.006

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


Specifications Table Value of the data The dataset provided in this article reflects the usefulness of the concept of Monte Carlo technique in determining the population of sickle cell anaemia at any point in time. The dataset encourages the importance of genotype screening before marriage. The finiteness nature of the dataset can be used for estimating the sickle cell anaemia population statistic: mean frequencies based on the mutation rate.

Data

The datasets used in this work are Sickle Cell Anaemia simulated data described in detail in [1]. This include the information contained in the Supplementary file. For related work on SCA, the following are referred [2], [3], [4], [5], [6], [7], [8]. In addition, Table 1 shows the frequency of the genotype (), Table 2 contains the genotype cumulative probability and Tag-numbers, while Table 3 shows the birth results from different mating.
Table 1

Genotype frequency.

GenotypeFrequency
AA69%
AS28%
SS3%

Note: During the physical simulation the birth of different genotypic group varied considerably with the distribution below.

Table 2

Genotype cumulative probability & Tag-numbers.

GenotypeProbabilityCumulative probabilityTag–Numbers
AA0.690.690–68
AS0.280.9769–96
SS0.031.0097 -
Table 3

Birth results from different mating.

GenotypeNo of Birth
1st gen./trial2nd gen./trial3rd gen./trial4th gen./trial5th gen./trial6th gen./trial7th gen./trial
AA1079810697110114107
AS47554755413943
SS2334536

Note: gen./trial denotes generation per trial.

Genotype frequency. Note: During the physical simulation the birth of different genotypic group varied considerably with the distribution below. Genotype cumulative probability & Tag-numbers. Birth results from different mating. Note: gen./trial denotes generation per trial. Every concerned person is entitled to two copies of the gene which decides whether that person has Sickle Cell Anaemia or not. If both copies are “normal alleles” then only normal haemoglobin is produced that implies “AA”. If one of the two alleles is defective then that person has a mixture of normal and Sickle haemoglobin resulting to a condition known as Sickle Cell trait “AS” (Carrier). On the other hand, if both alleles are defective, then that person has Sickle Cell Anaemia referred to as “SS”.

Experimental design, materials and methods

Simulation has been recorded to have made life more physical. Based on a simulated annealing procedure and experimental observations. Mathematical models of heredity are to a greater extent based on one-locus, two allele genes population, where little or no attempt is made to consider the dynamics of the population by Monte Carlo simulation technique.

Methodology and data analysis

The method used in the data analysis of the different genotypic groups viz: AA, AS, SS is MCS whose detailed steps and procedures are contained in [1].
Subject areaBiomathematics
More specific subject areaGenetics, Sickle Cells.
Type of dataTable, Excel file.
How data was acquiredData simulation via beads of two colours.
Data formatAnalysed, CSV comma delimited.
Experimental factorsInvestigation of the genetics of sickle cell trait via mathematical simulation.
Experimental featuresNon-gestating reproductive female with fertile male adults.
Data source locationResearch Laboratory, Nigeria.
Data accessibilityWithin this article.
  6 in total

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6.  Data in support of comparative physiology and proteomic analysis of two wheat genotypes contrasting in drought tolerance.

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  6 in total

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