Literature DB >> 29531354

Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.

Rainer Malik1, Ganesh Chauhan2, Matthew Traylor3, Muralidharan Sargurupremraj4,5, Yukinori Okada6,7,8, Kari Stefansson9,10, Bradford B Worrall11, Steven J Kittner12, Sudha Seshadri13,14, Myriam Fornage15,16, Hugh S Markus3, Joanna M M Howson17, Yoichiro Kamatani6,18, Stephanie Debette19,20, Martin Dichgans21,22,23, Aniket Mishra4,5, Loes Rutten-Jacobs3, Anne-Katrin Giese24, Sander W van der Laan25, Solveig Gretarsdottir9, Christopher D Anderson26,27,28, Michael Chong29, Hieab H H Adams30,31, Tetsuro Ago32, Peter Almgren33, Philippe Amouyel34,35, Hakan Ay27,36, Traci M Bartz37, Oscar R Benavente38, Steve Bevan39, Giorgio B Boncoraglio40, Robert D Brown41, Adam S Butterworth17,42, Caty Carrera43,44, Cara L Carty45,46, Daniel I Chasman47,48, Wei-Min Chen49, John W Cole12, Adolfo Correa50, Ioana Cotlarciuc51, Carlos Cruchaga52,53, John Danesh17,54,55,56, Paul I W de Bakker57,58, Anita L DeStefano59,13, Marcel den Hoed60, Qing Duan61, Stefan T Engelter62,63, Guido J Falcone64,65, Rebecca F Gottesman66, Raji P Grewal67, Vilmundur Gudnason68,10, Stefan Gustafsson69, Jeffrey Haessler70, Tamara B Harris71, Ahamad Hassan72, Aki S Havulinna73,74, Susan R Heckbert75, Elizabeth G Holliday76,77, George Howard78, Fang-Chi Hsu79, Hyacinth I Hyacinth80, M Arfan Ikram30, Erik Ingelsson81,69, Marguerite R Irvin82, Xueqiu Jian15, Jordi Jiménez-Conde83, Julie A Johnson84,85, J Wouter Jukema86, Masahiro Kanai6,7,87, Keith L Keene88,89, Brett M Kissela90, Dawn O Kleindorfer90, Charles Kooperberg70, Michiaki Kubo91, Leslie A Lange92, Carl D Langefeld93, Claudia Langenberg94, Lenore J Launer95, Jin-Moo Lee96, Robin Lemmens97,98, Didier Leys99, Cathryn M Lewis100,101, Wei-Yu Lin17,102, Arne G Lindgren103,104, Erik Lorentzen105, Patrik K Magnusson106, Jane Maguire107, Ani Manichaikul49, Patrick F McArdle108, James F Meschia109, Braxton D Mitchell108,110, Thomas H Mosley111,112, Michael A Nalls113,114, Toshiharu Ninomiya115, Martin J O'Donnell29,116, Bruce M Psaty117,75,118,119, Sara L Pulit57,120, Kristiina Rannikmäe121,122, Alexander P Reiner75,123, Kathryn M Rexrode124, Kenneth Rice125, Stephen S Rich49, Paul M Ridker47,48, Natalia S Rost24,27, Peter M Rothwell126, Jerome I Rotter127,128, Tatjana Rundek129, Ralph L Sacco129, Saori Sakaue7,130, Michele M Sale131, Veikko Salomaa73, Bishwa R Sapkota132, Reinhold Schmidt133, Carsten O Schmidt134, Ulf Schminke135, Pankaj Sharma51, Agnieszka Slowik136, Cathie L M Sudlow121,122, Christian Tanislav137, Turgut Tatlisumak138,139, Kent D Taylor127,128, Vincent N S Thijs140,141, Gudmar Thorleifsson9, Unnur Thorsteinsdottir9, Steffen Tiedt1, Stella Trompet142, Christophe Tzourio5,143,144, Cornelia M van Duijn145,146, Matthew Walters147, Nicholas J Wareham94, Sylvia Wassertheil-Smoller148, James G Wilson149, Kerri L Wiggins117, Qiong Yang59, Salim Yusuf29, Joshua C Bis117, Tomi Pastinen150, Arno Ruusalepp151,152,153, Eric E Schadt154, Simon Koplev154, Johan L M Björkegren154,155,156,153, Veronica Codoni157,158, Mete Civelek131,159, Nicholas L Smith75,160,161, David A Trégouët157,158, Ingrid E Christophersen65,162,163, Carolina Roselli65, Steven A Lubitz65,162, Patrick T Ellinor65,162, E Shyong Tai164, Jaspal S Kooner165, Norihiro Kato166, Jiang He167, Pim van der Harst168, Paul Elliott169, John C Chambers170,171, Fumihiko Takeuchi166, Andrew D Johnson13,172, Dharambir K Sanghera132,173,174, Olle Melander33, Christina Jern175, Daniel Strbian176,177, Israel Fernandez-Cadenas43,44, W T Longstreth75,178, Arndt Rolfs179, Jun Hata115, Daniel Woo90, Jonathan Rosand26,27,28, Guillaume Pare29, Jemma C Hopewell180, Danish Saleheen181.   

Abstract

Stroke has multiple etiologies, but the underlying genes and pathways are largely unknown. We conducted a multiancestry genome-wide-association meta-analysis in 521,612 individuals (67,162 cases and 454,450 controls) and discovered 22 new stroke risk loci, bringing the total to 32. We further found shared genetic variation with related vascular traits, including blood pressure, cardiac traits, and venous thromboembolism, at individual loci (n = 18), and using genetic risk scores and linkage-disequilibrium-score regression. Several loci exhibited distinct association and pleiotropy patterns for etiological stroke subtypes. Eleven new susceptibility loci indicate mechanisms not previously implicated in stroke pathophysiology, with prioritization of risk variants and genes accomplished through bioinformatics analyses using extensive functional datasets. Stroke risk loci were significantly enriched in drug targets for antithrombotic therapy.

Entities:  

Mesh:

Year:  2018        PMID: 29531354      PMCID: PMC5968830          DOI: 10.1038/s41588-018-0058-3

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  78 in total

1.  Meta-analysis of genome-wide association studies identifies 1q22 as a susceptibility locus for intracerebral hemorrhage.

Authors:  Daniel Woo; Guido J Falcone; William J Devan; W Mark Brown; Alessandro Biffi; Timothy D Howard; Christopher D Anderson; H Bart Brouwers; Valerie Valant; Thomas W K Battey; Farid Radmanesh; Miriam R Raffeld; Sylvia Baedorf-Kassis; Ranjan Deka; Jessica G Woo; Lisa J Martin; Mary Haverbusch; Charles J Moomaw; Guangyun Sun; Joseph P Broderick; Matthew L Flaherty; Sharyl R Martini; Dawn O Kleindorfer; Brett Kissela; Mary E Comeau; Jeremiasz M Jagiella; Helena Schmidt; Paul Freudenberger; Alexander Pichler; Christian Enzinger; Björn M Hansen; Bo Norrving; Jordi Jimenez-Conde; Eva Giralt-Steinhauer; Roberto Elosua; Elisa Cuadrado-Godia; Carolina Soriano; Jaume Roquer; Peter Kraft; Alison M Ayres; Kristin Schwab; Jacob L McCauley; Joanna Pera; Andrzej Urbanik; Natalia S Rost; Joshua N Goldstein; Anand Viswanathan; Eva-Maria Stögerer; David L Tirschwell; Magdy Selim; Devin L Brown; Scott L Silliman; Bradford B Worrall; James F Meschia; Chelsea S Kidwell; Joan Montaner; Israel Fernandez-Cadenas; Pilar Delgado; Rainer Malik; Martin Dichgans; Steven M Greenberg; Peter M Rothwell; Arne Lindgren; Agnieszka Slowik; Reinhold Schmidt; Carl D Langefeld; Jonathan Rosand
Journal:  Am J Hum Genet       Date:  2014-03-20       Impact factor: 11.025

2.  VEGAS2: Software for More Flexible Gene-Based Testing.

Authors:  Aniket Mishra; Stuart Macgregor
Journal:  Twin Res Hum Genet       Date:  2014-12-18       Impact factor: 1.587

3.  A sequence variant in ZFHX3 on 16q22 associates with atrial fibrillation and ischemic stroke.

Authors:  Daniel F Gudbjartsson; Hilma Holm; Solveig Gretarsdottir; Gudmar Thorleifsson; G Bragi Walters; Gudmundur Thorgeirsson; Jeffrey Gulcher; Ellisiv B Mathiesen; Inger Njølstad; Audhild Nyrnes; Tom Wilsgaard; Erin M Hald; Kristian Hveem; Camilla Stoltenberg; Gayle Kucera; Tanya Stubblefield; Shannon Carter; Dan Roden; Maggie C Y Ng; Larry Baum; Wing Yee So; Ka Sing Wong; Juliana C N Chan; Christian Gieger; H-Erich Wichmann; Andreas Gschwendtner; Martin Dichgans; Gregor Kuhlenbäumer; Klaus Berger; E Bernd Ringelstein; Steve Bevan; Hugh S Markus; Konstantinos Kostulas; Jan Hillert; Sigurlaug Sveinbjörnsdóttir; Einar M Valdimarsson; Maja-Lisa Løchen; Ronald C W Ma; Dawood Darbar; Augustine Kong; David O Arnar; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2009-07-13       Impact factor: 38.330

4.  Variants conferring risk of atrial fibrillation on chromosome 4q25.

Authors:  Daniel F Gudbjartsson; David O Arnar; Anna Helgadottir; Solveig Gretarsdottir; Hilma Holm; Asgeir Sigurdsson; Adalbjorg Jonasdottir; Adam Baker; Gudmar Thorleifsson; Kristleifur Kristjansson; Arnar Palsson; Thorarinn Blondal; Patrick Sulem; Valgerdur M Backman; Gudmundur A Hardarson; Ebba Palsdottir; Agnar Helgason; Runa Sigurjonsdottir; Jon T Sverrisson; Konstantinos Kostulas; Maggie C Y Ng; Larry Baum; Wing Yee So; Ka Sing Wong; Juliana C N Chan; Karen L Furie; Steven M Greenberg; Michelle Sale; Peter Kelly; Calum A MacRae; Eric E Smith; Jonathan Rosand; Jan Hillert; Ronald C W Ma; Patrick T Ellinor; Gudmundur Thorgeirsson; Jeffrey R Gulcher; Augustine Kong; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nature       Date:  2007-07-01       Impact factor: 49.962

5.  Transethnic meta-analysis of genomewide association studies.

Authors:  Andrew P Morris
Journal:  Genet Epidemiol       Date:  2011-12       Impact factor: 2.135

6.  Genetic variation at 16q24.2 is associated with small vessel stroke.

Authors:  Matthew Traylor; Rainer Malik; Mike A Nalls; Ioana Cotlarciuc; Farid Radmanesh; Gudmar Thorleifsson; Ken B Hanscombe; Carl Langefeld; Danish Saleheen; Natalia S Rost; Idil Yet; Tim D Spector; Jordana T Bell; Eilis Hannon; Jonathan Mill; Ganesh Chauhan; Stephanie Debette; Joshua C Bis; W T Longstreth; M Arfan Ikram; Lenore J Launer; Sudha Seshadri; Monica Anne Hamilton-Bruce; Jordi Jimenez-Conde; John W Cole; Reinhold Schmidt; Agnieszka Słowik; Robin Lemmens; Arne Lindgren; Olle Melander; Raji P Grewal; Ralph L Sacco; Tatjana Rundek; Kathryn Rexrode; Donna K Arnett; Julie A Johnson; Oscar R Benavente; Sylvia Wasssertheil-Smoller; Jin-Moo Lee; Sara L Pulit; Quenna Wong; Stephen S Rich; Paul I W de Bakker; Patrick F McArdle; Daniel Woo; Christopher D Anderson; Huichun Xu; Laura Heitsch; Myriam Fornage; Christina Jern; Kari Stefansson; Unnur Thorsteinsdottir; Solveig Gretarsdottir; Cathryn M Lewis; Pankaj Sharma; Cathie L M Sudlow; Peter M Rothwell; Giorgio B Boncoraglio; Vincent Thijs; Chris Levi; James F Meschia; Jonathan Rosand; Steven J Kittner; Braxton D Mitchell; Martin Dichgans; Bradford B Worrall; Hugh S Markus
Journal:  Ann Neurol       Date:  2017-03       Impact factor: 10.422

7.  Low-frequency and common genetic variation in ischemic stroke: The METASTROKE collaboration.

Authors:  Rainer Malik; Matthew Traylor; Sara L Pulit; Steve Bevan; Jemma C Hopewell; Elizabeth G Holliday; Wei Zhao; Patricia Abrantes; Philippe Amouyel; John R Attia; Thomas W K Battey; Klaus Berger; Giorgio B Boncoraglio; Ganesh Chauhan; Yu-Ching Cheng; Wei-Min Chen; Robert Clarke; Ioana Cotlarciuc; Stephanie Debette; Guido J Falcone; Jose M Ferro; Dale M Gamble; Andreea Ilinca; Steven J Kittner; Christina E Kourkoulis; Robin Lemmens; Christopher R Levi; Peter Lichtner; Arne Lindgren; Jingmin Liu; James F Meschia; Braxton D Mitchell; Sofia A Oliveira; Joana Pera; Alex P Reiner; Peter M Rothwell; Pankaj Sharma; Agnieszka Slowik; Cathie L M Sudlow; Turgut Tatlisumak; Vincent Thijs; Astrid M Vicente; Daniel Woo; Sudha Seshadri; Danish Saleheen; Jonathan Rosand; Hugh S Markus; Bradford B Worrall; Martin Dichgans
Journal:  Neurology       Date:  2016-03-02       Impact factor: 9.910

8.  Ischemic stroke is associated with the ABO locus: the EuroCLOT study.

Authors:  Frances M K Williams; Angela M Carter; Pirro G Hysi; Gabriela Surdulescu; Dylan Hodgkiss; Nicole Soranzo; Matthew Traylor; Steve Bevan; Martin Dichgans; Peter M W Rothwell; Cathie Sudlow; Martin Farrall; Kaisa Silander; Mari Kaunisto; Peter Wagner; Olli Saarela; Kari Kuulasmaa; Jarmo Virtamo; Veikko Salomaa; Philippe Amouyel; Dominique Arveiler; Jean Ferrieres; Per-Gunnar Wiklund; M Arfan Ikram; Albert Hofman; Giorgio B Boncoraglio; Eugenio A Parati; Anna Helgadottir; Solveig Gretarsdottir; Unnur Thorsteinsdottir; Gudmar Thorleifsson; Kari Stefansson; Sudha Seshadri; Anita DeStefano; Andreas Gschwendtner; Bruce Psaty; Will Longstreth; Braxton D Mitchell; Yu-Ching Cheng; Robert Clarke; Marco Ferrario; Joshua C Bis; Christopher Levi; John Attia; Elizabeth G Holliday; Rodney J Scott; Myriam Fornage; Pankaj Sharma; Karen L Furie; Jonathan Rosand; Mike Nalls; James Meschia; Thomas H Mosely; Alun Evans; Aarno Palotie; Hugh S Markus; Peter J Grant; Tim D Spector
Journal:  Ann Neurol       Date:  2013-01       Impact factor: 10.422

9.  Meta-analysis in more than 17,900 cases of ischemic stroke reveals a novel association at 12q24.12.

Authors:  Laura L Kilarski; Sefanja Achterberg; William J Devan; Matthew Traylor; Rainer Malik; Arne Lindgren; Guillame Pare; Pankaj Sharma; Agniesczka Slowik; Vincent Thijs; Matthew Walters; Bradford B Worrall; Michele M Sale; Ale Algra; L Jaap Kappelle; Cisca Wijmenga; Bo Norrving; Johanna K Sandling; Lars Rönnblom; An Goris; Andre Franke; Cathie Sudlow; Peter M Rothwell; Christopher Levi; Elizabeth G Holliday; Myriam Fornage; Bruce Psaty; Solveig Gretarsdottir; Unnar Thorsteinsdottir; Sudha Seshadri; Braxton D Mitchell; Steven Kittner; Robert Clarke; Jemma C Hopewell; Joshua C Bis; Giorgio B Boncoraglio; James Meschia; M Arfan Ikram; Bjorn M Hansen; Joan Montaner; Gudmar Thorleifsson; Kari Stefanson; Jonathan Rosand; Paul I W de Bakker; Martin Farrall; Martin Dichgans; Hugh S Markus; Steve Bevan
Journal:  Neurology       Date:  2014-07-16       Impact factor: 9.910

10.  A novel MMP12 locus is associated with large artery atherosclerotic stroke using a genome-wide age-at-onset informed approach.

Authors:  Matthew Traylor; Kari-Matti Mäkelä; Laura L Kilarski; Elizabeth G Holliday; William J Devan; Mike A Nalls; Kerri L Wiggins; Wei Zhao; Yu-Ching Cheng; Sefanja Achterberg; Rainer Malik; Cathie Sudlow; Steve Bevan; Emma Raitoharju; Niku Oksala; Vincent Thijs; Robin Lemmens; Arne Lindgren; Agnieszka Slowik; Jane M Maguire; Matthew Walters; Ale Algra; Pankaj Sharma; John R Attia; Giorgio B Boncoraglio; Peter M Rothwell; Paul I W de Bakker; Joshua C Bis; Danish Saleheen; Steven J Kittner; Braxton D Mitchell; Jonathan Rosand; James F Meschia; Christopher Levi; Martin Dichgans; Terho Lehtimäki; Cathryn M Lewis; Hugh S Markus
Journal:  PLoS Genet       Date:  2014-07-31       Impact factor: 5.917

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Review 2.  Polygenic Scores to Assess Atherosclerotic Cardiovascular Disease Risk: Clinical Perspectives and Basic Implications.

Authors:  Krishna G Aragam; Pradeep Natarajan
Journal:  Circ Res       Date:  2020-04-23       Impact factor: 17.367

3.  Associations of Combined Genetic and Lifestyle Risks With Incident Cardiovascular Disease and Diabetes in the UK Biobank Study.

Authors:  M Abdullah Said; Niek Verweij; Pim van der Harst
Journal:  JAMA Cardiol       Date:  2018-08-01       Impact factor: 14.676

4.  Big Data Approaches to Phenotyping Acute Ischemic Stroke Using Automated Lesion Segmentation of Multi-Center Magnetic Resonance Imaging Data.

Authors:  Ona Wu; Stefan Winzeck; Anne-Katrin Giese; Brandon L Hancock; Mark R Etherton; Mark J R J Bouts; Kathleen Donahue; Markus D Schirmer; Robert E Irie; Steven J T Mocking; Elissa C McIntosh; Raquel Bezerra; Konstantinos Kamnitsas; Petrea Frid; Johan Wasselius; John W Cole; Huichun Xu; Lukas Holmegaard; Jordi Jiménez-Conde; Robin Lemmens; Eric Lorentzen; Patrick F McArdle; James F Meschia; Jaume Roquer; Tatjana Rundek; Ralph L Sacco; Reinhold Schmidt; Pankaj Sharma; Agnieszka Slowik; Tara M Stanne; Vincent Thijs; Achala Vagal; Daniel Woo; Stephen Bevan; Steven J Kittner; Braxton D Mitchell; Jonathan Rosand; Bradford B Worrall; Christina Jern; Arne G Lindgren; Jane Maguire; Natalia S Rost
Journal:  Stroke       Date:  2019-06-10       Impact factor: 7.914

Review 5.  Preventing dementia by preventing stroke: The Berlin Manifesto.

Authors:  Vladimir Hachinski; Karl Einhäupl; Detlev Ganten; Suvarna Alladi; Carol Brayne; Blossom C M Stephan; Melanie D Sweeney; Berislav Zlokovic; Yasser Iturria-Medina; Costantino Iadecola; Nozomi Nishimura; Chris B Schaffer; Shawn N Whitehead; Sandra E Black; Leif Østergaard; Joanna Wardlaw; Steven Greenberg; Leif Friberg; Bo Norrving; Brian Rowe; Yves Joanette; Werner Hacke; Lewis Kuller; Martin Dichgans; Matthias Endres; Zaven S Khachaturian
Journal:  Alzheimers Dement       Date:  2019-07       Impact factor: 21.566

6.  SNPs rs10224002 in PRKAG2 may disturb gene expression and consequently affect hypertension.

Authors:  Xingbo Mo; Huan Zhang; Zhengyuan Zhou; Zhengbao Zhu; Xinfeng HuangFu; Tan Xu; Aili Wang; Zhirong Guo; Yonghong Zhang
Journal:  Mol Biol Rep       Date:  2019-01-28       Impact factor: 2.316

Review 7.  Emerging molecular mechanisms of vascular dementia.

Authors:  Milagros C Romay; Camilo Toro; M Luisa Iruela-Arispe
Journal:  Curr Opin Hematol       Date:  2019-05       Impact factor: 3.284

8.  A stroke gene panel for whole-exome sequencing.

Authors:  Andreea Ilinca; Sofie Samuelsson; Paul Piccinelli; Maria Soller; Ulf Kristoffersson; Arne G Lindgren
Journal:  Eur J Hum Genet       Date:  2018-10-24       Impact factor: 4.246

Review 9.  Copy Number Variation and Risk of Stroke.

Authors:  Caspar Grond-Ginsbach; Philipp Erhart; Bowang Chen; Manja Kloss; Stefan T Engelter; John W Cole
Journal:  Stroke       Date:  2018-10       Impact factor: 7.914

10.  Thyroid Function and Dysfunction in Relation to 16 Cardiovascular Diseases.

Authors:  Susanna C Larsson; Elias Allara; Amy M Mason; Karl Michaëlsson; Stephen Burgess
Journal:  Circ Genom Precis Med       Date:  2019-03
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