Literature DB >> 22178866

Hydrogen bond dynamics in membrane protein function.

Ana-Nicoleta Bondar1, Stephen H White.   

Abstract

Changes in inter-helical hydrogen bonding are associated with the conformational dynamics of membrane proteins. The function of the protein depends on the surrounding lipid membrane. Here we review through specific examples how dynamical hydrogen bonds can ensure an elegant and efficient mechanism of long-distance intra-protein and protein-lipid coupling, contributing to the stability of discrete protein conformational substates and to rapid propagation of structural perturbations. This article is part of a Special Issue entitled: Protein Folding in Membranes. Copyright Â
© 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 22178866      PMCID: PMC3288666          DOI: 10.1016/j.bbamem.2011.11.035

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  53 in total

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Authors:  Michael S Wolfe; Raphael Kopan
Journal:  Science       Date:  2004-08-20       Impact factor: 47.728

2.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

3.  How fast-folding proteins fold.

Authors:  Kresten Lindorff-Larsen; Stefano Piana; Ron O Dror; David E Shaw
Journal:  Science       Date:  2011-10-28       Impact factor: 47.728

4.  Open-cap conformation of intramembrane protease GlpG.

Authors:  Yongcheng Wang; Ya Ha
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-02       Impact factor: 11.205

5.  Crystal structure of a rhomboid family intramembrane protease.

Authors:  Yongcheng Wang; Yingjiu Zhang; Ya Ha
Journal:  Nature       Date:  2006-10-11       Impact factor: 49.962

6.  The lateral gate of SecYEG opens during protein translocation.

Authors:  David J F du Plessis; Greetje Berrelkamp; Nico Nouwen; Arnold J M Driessen
Journal:  J Biol Chem       Date:  2009-04-14       Impact factor: 5.157

7.  Dynamics of SecY translocons with translocation-defective mutations.

Authors:  Ana-Nicoleta Bondar; Coral del Val; J Alfredo Freites; Douglas J Tobias; Stephen H White
Journal:  Structure       Date:  2010-07-14       Impact factor: 5.006

8.  Identification of signal peptide peptidase, a presenilin-type aspartic protease.

Authors:  Andreas Weihofen; Kathleen Binns; Marius K Lemberg; Keith Ashman; Bruno Martoglio
Journal:  Science       Date:  2002-06-21       Impact factor: 47.728

9.  Nanodiscs unravel the interaction between the SecYEG channel and its cytosolic partner SecA.

Authors:  Meriem Alami; Kush Dalal; Barbara Lelj-Garolla; Stephen G Sligar; Franck Duong
Journal:  EMBO J       Date:  2007-03-29       Impact factor: 11.598

10.  Structure of a complex of the ATPase SecA and the protein-translocation channel.

Authors:  Jochen Zimmer; Yunsun Nam; Tom A Rapoport
Journal:  Nature       Date:  2008-10-16       Impact factor: 49.962

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  21 in total

1.  Sequential steps in the assembly of the multimeric outer membrane secretin PulD.

Authors:  Gerard H M Huysmans; Ingrid Guilvout; Anthony P Pugsley
Journal:  J Biol Chem       Date:  2013-09-09       Impact factor: 5.157

2.  Electrostatic interactions and hydrogen bond dynamics in chloride pumping by halorhodopsin.

Authors:  Eduardo Jardón-Valadez; Ana-Nicoleta Bondar; Douglas J Tobias
Journal:  Biochim Biophys Acta       Date:  2014-12

3.  Dynamics of the Plasma Membrane Proton Pump.

Authors:  Federico Guerra; Ana-Nicoleta Bondar
Journal:  J Membr Biol       Date:  2014-10-02       Impact factor: 1.843

4.  Computational Analysis of Energy Landscapes Reveals Dynamic Features That Contribute to Binding of Inhibitors to CFTR-Associated Ligand.

Authors:  Graham T Holt; Jonathan D Jou; Nicholas P Gill; Anna U Lowegard; Jeffrey W Martin; Dean R Madden; Bruce R Donald
Journal:  J Phys Chem B       Date:  2019-11-27       Impact factor: 2.991

5.  Structure and Function in Antimicrobial Piscidins: Histidine Position, Directionality of Membrane Insertion, and pH-Dependent Permeabilization.

Authors:  Mihaela Mihailescu; Mirco Sorci; Jolita Seckute; Vitalii I Silin; Janet Hammer; B Scott Perrin; Jorge I Hernandez; Nedzada Smajic; Akritee Shrestha; Kimberly A Bogardus; Alexander I Greenwood; Riqiang Fu; Jack Blazyk; Richard W Pastor; Linda K Nicholson; Georges Belfort; Myriam L Cotten
Journal:  J Am Chem Soc       Date:  2019-06-13       Impact factor: 15.419

6.  Transmembrane region of bacterial chemoreceptor is capable of promoting protein clustering.

Authors:  Abiola M Pollard; Victor Sourjik
Journal:  J Biol Chem       Date:  2017-12-19       Impact factor: 5.157

7.  Dynamic Water Hydrogen-Bond Networks at the Interface of a Lipid Membrane Containing Palmitoyl-Oleoyl Phosphatidylglycerol.

Authors:  Konstantina Karathanou; Ana-Nicoleta Bondar
Journal:  J Membr Biol       Date:  2018-03-09       Impact factor: 1.843

8.  Lipid-Mediated Regulation of Embedded Receptor Kinases via Parallel Allosteric Relays.

Authors:  Madhubrata Ghosh; Loo Chien Wang; Ranita Ramesh; Leslie K Morgan; Linda J Kenney; Ganesh S Anand
Journal:  Biophys J       Date:  2017-02-28       Impact factor: 4.033

9.  The importance of being aromatic: π interactions in sodium symporters.

Authors:  Xuan Jiang; Donald D F Loo; Bruce A Hirayama; Ernest M Wright
Journal:  Biochemistry       Date:  2012-11-12       Impact factor: 3.162

Review 10.  Membrane Protein Structure, Function, and Dynamics: a Perspective from Experiments and Theory.

Authors:  Zoe Cournia; Toby W Allen; Ioan Andricioaei; Bruno Antonny; Daniel Baum; Grace Brannigan; Nicolae-Viorel Buchete; Jason T Deckman; Lucie Delemotte; Coral Del Val; Ran Friedman; Paraskevi Gkeka; Hans-Christian Hege; Jérôme Hénin; Marina A Kasimova; Antonios Kolocouris; Michael L Klein; Syma Khalid; M Joanne Lemieux; Norbert Lindow; Mahua Roy; Jana Selent; Mounir Tarek; Florentina Tofoleanu; Stefano Vanni; Sinisa Urban; David J Wales; Jeremy C Smith; Ana-Nicoleta Bondar
Journal:  J Membr Biol       Date:  2015-06-11       Impact factor: 1.843

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