Literature DB >> 29517919

Modeling Cell Size Regulation: From Single-Cell-Level Statistics to Molecular Mechanisms and Population-Level Effects.

Po-Yi Ho1, Jie Lin1, Ariel Amir1.   

Abstract

Most microorganisms regulate their cell size. In this article, we review some of the mathematical formulations of the problem of cell size regulation. We focus on coarse-grained stochastic models and the statistics that they generate. We review the biologically relevant insights obtained from these models. We then describe cell cycle regulation and its molecular implementations, protein number regulation, and population growth, all in relation to size regulation. Finally, we discuss several future directions for developing understanding beyond phenomenological models of cell size regulation.

Keywords:  cell size regulation; coarse-grained stochastic models; microbial cell cycle; molecular mechanisms; population growth; single-cell variability

Mesh:

Year:  2018        PMID: 29517919     DOI: 10.1146/annurev-biophys-070317-032955

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  13 in total

1.  A Mechanistic Model of the Regulation of Division Timing by the Circadian Clock in Cyanobacteria.

Authors:  Po-Yi Ho; Bruno M C Martins; Ariel Amir
Journal:  Biophys J       Date:  2020-05-20       Impact factor: 4.033

2.  Cell-size regulation in budding yeast does not depend on linear accumulation of Whi5.

Authors:  Felix Barber; Ariel Amir; Andrew W Murray
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-09       Impact factor: 11.205

3.  The interplay of phenotypic variability and fitness in finite microbial populations.

Authors:  Ethan Levien; Jane Kondev; Ariel Amir
Journal:  J R Soc Interface       Date:  2020-05-13       Impact factor: 4.118

4.  Distinguishing different modes of growth using single-cell data.

Authors:  Prathitha Kar; Sriram Tiruvadi-Krishnan; Jaana Männik; Jaan Männik; Ariel Amir
Journal:  Elife       Date:  2021-12-02       Impact factor: 8.140

5.  The Empirical Fluctuation Pattern of E. coli Division Control.

Authors:  Jacopo Grilli; Clotilde Cadart; Gabriele Micali; Matteo Osella; Marco Cosentino Lagomarsino
Journal:  Front Microbiol       Date:  2018-07-30       Impact factor: 5.640

6.  Homeostasis of protein and mRNA concentrations in growing cells.

Authors:  Jie Lin; Ariel Amir
Journal:  Nat Commun       Date:  2018-10-29       Impact factor: 14.919

7.  Coordination of Growth, Chromosome Replication/Segregation, and Cell Division in E. coli.

Authors:  Nancy E Kleckner; Katerina Chatzi; Martin A White; Jay K Fisher; Mathieu Stouf
Journal:  Front Microbiol       Date:  2018-07-09       Impact factor: 5.640

8.  Hidden long-range memories of growth and cycle speed correlate cell cycles in lineage trees.

Authors:  Erika E Kuchen; Nils B Becker; Nina Claudino; Thomas Höfer
Journal:  Elife       Date:  2020-01-23       Impact factor: 8.140

9.  Efficient computation of stochastic cell-size transient dynamics.

Authors:  Cesar Augusto Nieto-Acuna; Cesar Augusto Vargas-Garcia; Abhyudai Singh; Juan Manuel Pedraza
Journal:  BMC Bioinformatics       Date:  2019-12-27       Impact factor: 3.169

10.  Contributions to the 'noise floor' in gene expression in a population of dividing cells.

Authors:  Jakub Jędrak; Anna Ochab-Marcinek
Journal:  Sci Rep       Date:  2020-08-11       Impact factor: 4.379

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