Literature DB >> 34854811

Distinguishing different modes of growth using single-cell data.

Prathitha Kar1,2, Sriram Tiruvadi-Krishnan3, Jaana Männik3, Jaan Männik3, Ariel Amir1.   

Abstract

Collection of high-throughput data has become prevalent in biology. Large datasets allow the use of statistical constructs such as binning and linear regression to quantify relationships between variables and hypothesize underlying biological mechanisms based on it. We discuss several such examples in relation to single-cell data and cellular growth. In particular, we show instances where what appears to be ordinary use of these statistical methods leads to incorrect conclusions such as growth being non-exponential as opposed to exponential and vice versa. We propose that the data analysis and its interpretation should be done in the context of a generative model, if possible. In this way, the statistical methods can be validated either analytically or against synthetic data generated via the use of the model, leading to a consistent method for inferring biological mechanisms from data. On applying the validated methods of data analysis to infer cellular growth on our experimental data, we find the growth of length in E. coli to be non-exponential. Our analysis shows that in the later stages of the cell cycle the growth rate is faster than exponential.
© 2021, Kar et al.

Entities:  

Keywords:  E. coli; data analysis; infectious disease; linear regression; mathematical model; microbial growth; microbiology; physics of living systems

Mesh:

Year:  2021        PMID: 34854811      PMCID: PMC8727026          DOI: 10.7554/eLife.72565

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


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  1 in total

1.  Distinguishing different modes of growth using single-cell data.

Authors:  Prathitha Kar; Sriram Tiruvadi-Krishnan; Jaana Männik; Jaan Männik; Ariel Amir
Journal:  Elife       Date:  2021-12-02       Impact factor: 8.140

  1 in total

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