Literature DB >> 29501424

Comparison between iMSD and 2D-pCF analysis for molecular motion studies on in vivo cells: The case of the epidermal growth factor receptor.

Leonel Malacrida1, Estella Rao2, Enrico Gratton3.   

Abstract

Image correlation analysis has evolved to become a valuable method of analysis of the diffusional motion of molecules in every points of a live cell. Here we compare the iMSD and the 2D-pCF approaches that provide complementary information. The iMSD method provides the law of diffusion and it requires spatial averaging over a small region of the cell. The 2D-pCF does not require spatial averaging and it gives information about obstacles for diffusion at pixel resolution. We show the analysis of the same set of data by the two methods to emphasize that both methods could be needed to have a comprehensive understanding of the molecular diffusional flow in a live cell.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Barrier to diffusion; Connectivity maps; Diffusion anisotropy; Fluorescence fluctuation spectroscopy

Mesh:

Substances:

Year:  2018        PMID: 29501424      PMCID: PMC5999564          DOI: 10.1016/j.ymeth.2018.01.010

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  10 in total

1.  Single plane illumination fluorescence correlation spectroscopy (SPIM-FCS) probes inhomogeneous three-dimensional environments.

Authors:  Thorsten Wohland; Xianke Shi; Jagadish Sankaran; Ernst H K Stelzer
Journal:  Opt Express       Date:  2010-05-10       Impact factor: 3.894

2.  Spatiotemporal image correlation spectroscopy (STICS) theory, verification, and application to protein velocity mapping in living CHO cells.

Authors:  Benedict Hebert; Santiago Costantino; Paul W Wiseman
Journal:  Biophys J       Date:  2005-02-18       Impact factor: 4.033

3.  k-Space image correlation spectroscopy: a method for accurate transport measurements independent of fluorophore photophysics.

Authors:  David L Kolin; David Ronis; Paul W Wiseman
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

4.  Fast spatiotemporal correlation spectroscopy to determine protein lateral diffusion laws in live cell membranes.

Authors:  Carmine Di Rienzo; Enrico Gratton; Fabio Beltram; Francesco Cardarelli
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-08       Impact factor: 11.205

5.  Diffusion, transport, and cell membrane organization investigated by imaging fluorescence cross-correlation spectroscopy.

Authors:  Jagadish Sankaran; Manoj Manna; Lin Guo; Rachel Kraut; Thorsten Wohland
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

6.  Imaging barriers to diffusion by pair correlation functions.

Authors:  Michelle A Digman; Enrico Gratton
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

7.  Diffusion Tensor Analysis by Two-Dimensional Pair Correlation of Fluorescence Fluctuations in Cells.

Authors:  Carmine Di Rienzo; Francesco Cardarelli; Mariagrazia Di Luca; Fabio Beltram; Enrico Gratton
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

8.  Visualization of barriers and obstacles to molecular diffusion in live cells by spatial pair-cross-correlation in two dimensions.

Authors:  Leonel Malacrida; Per Niklas Hedde; Suman Ranjit; Francesco Cardarelli; Enrico Gratton
Journal:  Biomed Opt Express       Date:  2017-12-20       Impact factor: 3.732

9.  Mean square displacement analysis of single-particle trajectories with localization error: Brownian motion in an isotropic medium.

Authors:  Xavier Michalet
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-10-20

10.  gamma-glutamyl leukotrienase, a gamma-glutamyl transpeptidase gene family member, is expressed primarily in spleen.

Authors:  B Z Carter; Z Z Shi; R Barrios; M W Lieberman
Journal:  J Biol Chem       Date:  1998-10-23       Impact factor: 5.157

  10 in total
  3 in total

1.  Barriers to Diffusion in Cells: Visualization of Membraneless Particles in the Nucleus.

Authors:  Leonel Malacrida; Per Niklas Hedde; Belen Torrado; Enrico Gratton
Journal:  Biophysicist (Rockv)       Date:  2020-08-13

2.  Fluorescence Fluctuation Spectroscopy enables quantification of potassium channel subunit dynamics and stoichiometry.

Authors:  Giulia Tedeschi; Lorenzo Scipioni; Maria Papanikolaou; Geoffrey W Abbott; Michelle A Digman
Journal:  Sci Rep       Date:  2021-05-21       Impact factor: 4.379

3.  Comprehensive correlation analysis for super-resolution dynamic fingerprinting of cellular compartments using the Zeiss Airyscan detector.

Authors:  L Scipioni; L Lanzanó; A Diaspro; E Gratton
Journal:  Nat Commun       Date:  2018-11-30       Impact factor: 14.919

  3 in total

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