Literature DB >> 23836651

Fast spatiotemporal correlation spectroscopy to determine protein lateral diffusion laws in live cell membranes.

Carmine Di Rienzo1, Enrico Gratton, Fabio Beltram, Francesco Cardarelli.   

Abstract

Spatial distribution and dynamics of plasma-membrane proteins are thought to be modulated by lipid composition and by the underlying cytoskeleton, which forms transient barriers to diffusion. So far this idea was probed by single-particle tracking of membrane components in which gold particles or antibodies were used to individually monitor the molecules of interest. Unfortunately, the relatively large particles needed for single-particle tracking can in principle alter the very dynamics under study. Here, we use a method that makes it possible to investigate plasma-membrane proteins by means of small molecular labels, specifically single GFP constructs. First, fast imaging of the region of interest on the membrane is performed. For each time delay in the resulting stack of images the average spatial correlation function is calculated. We show that by fitting the series of correlation functions, the actual protein "diffusion law" can be obtained directly from imaging, in the form of a mean-square displacement vs. time-delay plot, with no need for interpretative models. This approach is tested with several simulated 2D diffusion conditions and in live Chinese hamster ovary cells with a GFP-tagged transmembrane transferrin receptor, a well-known benchmark of membrane-skeleton-dependent transiently confined diffusion. This approach does not require extraction of the individual trajectories and can be used also with dim and dense molecules. We argue that it represents a powerful tool for the determination of kinetic and thermodynamic parameters over very wide spatial and temporal scales.

Entities:  

Keywords:  fluorescence; membrane heterogeneity; protein dynamics; single molecule; transient confinement

Mesh:

Substances:

Year:  2013        PMID: 23836651      PMCID: PMC3725058          DOI: 10.1073/pnas.1222097110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

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Review 2.  Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: high-speed single-molecule tracking of membrane molecules.

Authors:  Akihiro Kusumi; Chieko Nakada; Ken Ritchie; Kotono Murase; Kenichi Suzuki; Hideji Murakoshi; Rinshi S Kasai; Junko Kondo; Takahiro Fujiwara
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3.  Studying slow membrane dynamics with continuous wave scanning fluorescence correlation spectroscopy.

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Journal:  Biophys J       Date:  2006-06-16       Impact factor: 4.033

4.  Probing the integrin-actin linkage using high-resolution protein velocity mapping.

Authors:  Claire M Brown; Benedict Hebert; David L Kolin; Jessica Zareno; Leanna Whitmore; Alan Rick Horwitz; Paul W Wiseman
Journal:  J Cell Sci       Date:  2006-12-15       Impact factor: 5.285

5.  Particle image correlation spectroscopy (PICS): retrieving nanometer-scale correlations from high-density single-molecule position data.

Authors:  S Semrau; T Schmidt
Journal:  Biophys J       Date:  2006-11-03       Impact factor: 4.033

6.  STICCS reveals matrix-dependent adhesion slipping and gripping in migrating cells.

Authors:  Tim Toplak; Elvis Pandzic; Lingfeng Chen; Miguel Vicente-Manzanares; Alan Rick Horwitz; Paul W Wiseman
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7.  Single molecule imaging of green fluorescent proteins in living cells: E-cadherin forms oligomers on the free cell surface.

Authors:  R Iino; I Koyama; A Kusumi
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

8.  Dynamics of GPI-anchored proteins on the surface of living cells.

Authors:  Anja Nohe; Eleonora Keating; Marc Fivaz; F Gisou van der Goot; Nils O Petersen
Journal:  Nanomedicine       Date:  2006-03       Impact factor: 5.307

9.  Spot variation fluorescence correlation spectroscopy allows for superresolution chronoscopy of confinement times in membranes.

Authors:  Verena Ruprecht; Stefan Wieser; Didier Marguet; Gerhard J Schütz
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

10.  Barriers for lateral diffusion of transferrin receptor in the plasma membrane as characterized by receptor dragging by laser tweezers: fence versus tether.

Authors:  Y Sako; A Kusumi
Journal:  J Cell Biol       Date:  1995-06       Impact factor: 10.539

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  72 in total

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Journal:  Biochemistry       Date:  2016-11-29       Impact factor: 3.162

Review 2.  Super-Resolution Microscopy: Shedding Light on the Cellular Plasma Membrane.

Authors:  Matthew B Stone; Sarah A Shelby; Sarah L Veatch
Journal:  Chem Rev       Date:  2017-02-17       Impact factor: 60.622

3.  Spot size variation FCS in simulations of the 2D Ising model.

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Journal:  J Phys D Appl Phys       Date:  2016-05-03       Impact factor: 3.207

Review 4.  Imaging methodologies for systems biology.

Authors:  Sarah E Smith; Brian D Slaughter; Jay R Unruh
Journal:  Cell Adh Migr       Date:  2014-11-01       Impact factor: 3.405

5.  How spatial heterogeneity shapes multiscale biochemical reaction network dynamics.

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Journal:  J R Soc Interface       Date:  2015-03-06       Impact factor: 4.118

6.  Layered acoustofluidic resonators for the simultaneous optical and acoustic characterisation of cavitation dynamics, microstreaming, and biological effects.

Authors:  V Pereno; M Aron; O Vince; C Mannaris; A Seth; M de Saint Victor; G Lajoinie; M Versluis; C Coussios; D Carugo; E Stride
Journal:  Biomicrofluidics       Date:  2018-05-30       Impact factor: 2.800

7.  Biologists Wanted: New Fluorescence Fluctuation Tools for Cell Biology.

Authors:  Katharina Gaus
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

8.  Diffusion Tensor Analysis by Two-Dimensional Pair Correlation of Fluorescence Fluctuations in Cells.

Authors:  Carmine Di Rienzo; Francesco Cardarelli; Mariagrazia Di Luca; Fabio Beltram; Enrico Gratton
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

9.  Resolving Fast, Confined Diffusion in Bacteria with Image Correlation Spectroscopy.

Authors:  David J Rowland; Hannah H Tuson; Julie S Biteen
Journal:  Biophys J       Date:  2016-05-24       Impact factor: 4.033

10.  An apolipoprotein-enriched biomolecular corona switches the cellular uptake mechanism and trafficking pathway of lipid nanoparticles.

Authors:  L Digiacomo; F Cardarelli; D Pozzi; S Palchetti; M A Digman; E Gratton; A L Capriotti; M Mahmoudi; G Caracciolo
Journal:  Nanoscale       Date:  2017-11-16       Impact factor: 7.790

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