Literature DB >> 29500529

From quasispecies to quasispaces: coding and cooperation in chemical and electronic systems.

John S McCaskill1,2.   

Abstract

This contribution addresses the physical roles of spatial structures, either externally imposed or generated through self-assembly, either passive or active, on the physical chemistry of evolution. Starting with simple diffusion in closed capillaries, a one-dimensional space, it covers eight aspects of experimental and theoretical research into the interaction of evolution with spatial structures: in various dimensions, including hitherto unexplored ones, spanning from externally defined physical spaces to actively tailored spaces, assembled by the evolving components themselves. As such, it contains some original research by the author as well as tracing how other insights grew over three decades out of the mentorship of Manfred Eigen in the 1980s. Much of the early interest in spatial structures centres on its role in stabilizing higher order cooperative structures involving the coevolution of different molecules, as the genetic coding system exemplifies. Modern nanotechnology enables the design and construction of genetically encoded variants of smart components that can actively control both the proliferation of molecules and the structuring of space. A key role for this article is to show the continuity in this line of enquiry, beginning with quasispecies and projecting to autonomous microparticles with electronic genomes able to form programmable quasispaces.

Entities:  

Keywords:  Evolution; Lablets; Microfluidics; Reaction diffusion; Synthetic biology; cooperation

Mesh:

Year:  2018        PMID: 29500529     DOI: 10.1007/s00249-018-1284-4

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   2.095


  52 in total

1.  Evolutionary self-organization of cell-free genetic coding.

Authors:  R M Füchslin; J S McCaskill
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

2.  Solution of a 20-variable 3-SAT problem on a DNA computer.

Authors:  Ravinderjit S Braich; Nickolas Chelyapov; Cliff Johnson; Paul W K Rothemund; Leonard Adleman
Journal:  Science       Date:  2002-03-14       Impact factor: 47.728

3.  Fabrication and performance of a microfluidic traveling-wave electrophoresis system.

Authors:  Kyoo D Jo; Jarrod E Schiffbauer; Boyd E Edwards; R Lloyd Carroll; Aaron T Timperman
Journal:  Analyst       Date:  2011-11-16       Impact factor: 4.616

4.  Replication of viruses in a growing plaque: a reaction-diffusion model.

Authors:  J Yin; J S McCaskill
Journal:  Biophys J       Date:  1992-06       Impact factor: 4.033

5.  Evolutionary self-organization in complex fluids.

Authors:  John S McCaskill; Norman H Packard; Steen Rasmussen; Mark A Bedau
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2007-10-29       Impact factor: 6.237

6.  A molecular predator and its prey: coupled isothermal amplification of nucleic acids.

Authors:  B Wlotzka; J S McCaskill
Journal:  Chem Biol       Date:  1997-01

7.  Steep pH Gradients and Directed Colloid Transport in a Microfluidic Alkaline Hydrothermal Pore.

Authors:  Friederike M Möller; Franziska Kriegel; Michael Kieß; Victor Sojo; Dieter Braun
Journal:  Angew Chem Int Ed Engl       Date:  2017-01-24       Impact factor: 15.336

8.  A computer model of evolutionary optimization.

Authors:  W Fontana; P Schuster
Journal:  Biophys Chem       Date:  1987-05-09       Impact factor: 2.352

9.  Kinetics of RNA replication: plus-minus asymmetry and double-strand formation.

Authors:  C K Biebricher; M Eigen; W C Gardiner
Journal:  Biochemistry       Date:  1984-07-03       Impact factor: 3.162

Review 10.  Spatially resolved in vitro molecular ecology.

Authors:  J S McCaskill
Journal:  Biophys Chem       Date:  1997-06-30       Impact factor: 2.352

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  1 in total

1.  Models of Replicator Proliferation Involving Differential Replicator Subunit Stability.

Authors:  Zewei Li; Runhe Lyu; John Tower
Journal:  Orig Life Evol Biosph       Date:  2018-09-10       Impact factor: 1.950

  1 in total

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