Literature DB >> 17553771

Evolutionary self-organization in complex fluids.

John S McCaskill1, Norman H Packard, Steen Rasmussen, Mark A Bedau.   

Abstract

This paper explores the ability of molecular evolution to take control of collective physical phases, making the first decisive step from independent replicators towards cell-like collective structures. We develop a physical model of replicating combinatorial molecules in a ternary fluid of hydrocarbons, amphiphiles and water. Such systems are being studied experimentally in various laboratories to approach the synthesis of artificial cells, and are also relevant to the origin of cellular life. The model represents amphiphiles by spins on a lattice (with Ising coupling in the simplest case), coupled to replicating molecules that may diffuse on the lattice and react with each other. The presence of the replicating molecules locally modulates the phases of the complex fluid, and the physical replication process and/or mobility of the replicating molecules is influenced by the local amphiphilic configuration through an energetic coupling. Consequently, the replicators can potentially modify their environment to enhance their own replication. Through this coupling, the system can associate hereditary properties, and the potential for autonomous evolution, to self-assembling mesoscale structures in the complex fluid. This opens a route to analyse the evolution of artificial cells. The models are studied using Monte Carlo simulation, and demonstrate the evolution of phase control. We achieve a unified combinatorial framework for the description of isotropic families of spin-lattice models of complex phases, opening up the physical study of their evolution.

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Year:  2007        PMID: 17553771      PMCID: PMC2442392          DOI: 10.1098/rstb.2007.2069

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  22 in total

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Journal:  Phys Rev Lett       Date:  2001-04-30       Impact factor: 9.161

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Journal:  Phys Rev Lett       Date:  2001-11-07       Impact factor: 9.161

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Authors:  Steen Rasmussen; Liaohai Chen; David Deamer; David C Krakauer; Norman H Packard; Peter F Stadler; Mark A Bedau
Journal:  Science       Date:  2004-02-13       Impact factor: 47.728

Review 5.  The promise and peril of continuous in vitro evolution.

Authors:  Glenn C Johns; Gerald F Joyce
Journal:  J Mol Evol       Date:  2005-06-27       Impact factor: 2.395

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Journal:  Phys Rev A Gen Phys       Date:  1989-09-15

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Journal:  J Theor Biol       Date:  1987-10-21       Impact factor: 2.691

9.  The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle.

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Review 10.  Spatially resolved in vitro molecular ecology.

Authors:  J S McCaskill
Journal:  Biophys Chem       Date:  1997-06-30       Impact factor: 2.352

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  1 in total

Review 1.  From quasispecies to quasispaces: coding and cooperation in chemical and electronic systems.

Authors:  John S McCaskill
Journal:  Eur Biophys J       Date:  2018-03-02       Impact factor: 2.095

  1 in total

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