Literature DB >> 29494241

Directed Evolution of Protein Catalysts.

Cathleen Zeymer1, Donald Hilvert1.   

Abstract

Directed evolution is a powerful technique for generating tailor-made enzymes for a wide range of biocatalytic applications. Following the principles of natural evolution, iterative cycles of mutagenesis and screening or selection are applied to modify protein properties, enhance catalytic activities, or develop completely new protein catalysts for non-natural chemical transformations. This review briefly surveys the experimental methods used to generate genetic diversity and screen or select for improved enzyme variants. Emphasis is placed on a key challenge, namely how to generate novel catalytic activities that expand the scope of natural reactions. Two particularly effective strategies, exploiting catalytic promiscuity and rational design, are illustrated by representative examples of successfully evolved enzymes. Opportunities for extending these approaches to more complex biocatalytic systems are also considered.

Keywords:  computational design; enzyme catalysis; metalloenzymes; protein engineering; screening; selection

Mesh:

Substances:

Year:  2018        PMID: 29494241     DOI: 10.1146/annurev-biochem-062917-012034

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  61 in total

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Authors:  A S Zadorin; Y Rondelez
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2.  Machine learning-assisted directed protein evolution with combinatorial libraries.

Authors:  Zachary Wu; S B Jennifer Kan; Russell D Lewis; Bruce J Wittmann; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-12       Impact factor: 11.205

3.  Fluorescence-Activated Droplet Sorting for Single-Cell Directed Evolution.

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Journal:  ACS Synth Biol       Date:  2019-05-23       Impact factor: 5.110

4.  Tailoring Tryptophan Synthase TrpB for Selective Quaternary Carbon Bond Formation.

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Journal:  J Am Chem Soc       Date:  2019-12-06       Impact factor: 15.419

Review 5.  A mechanistic view of enzyme evolution.

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Review 6.  Upgrading aminoacyl-tRNA synthetases for genetic code expansion.

Authors:  Oscar Vargas-Rodriguez; Anastasia Sevostyanova; Dieter Söll; Ana Crnković
Journal:  Curr Opin Chem Biol       Date:  2018-07-27       Impact factor: 8.822

7.  Antha-Guided Automation of Darwin Assembly for the Construction of Bespoke Gene Libraries.

Authors:  P Handal-Marquez; M Koch; D Kestemont; S Arangundy-Franklin; V B Pinheiro
Journal:  Methods Mol Biol       Date:  2022

Review 8.  Learning Strategies in Protein Directed Evolution.

Authors:  Xavier F Cadet; Jean Christophe Gelly; Aster van Noord; Frédéric Cadet; Carlos G Acevedo-Rocha
Journal:  Methods Mol Biol       Date:  2022

Review 9.  A global analysis of function and conservation of catalytic residues in enzymes.

Authors:  António J M Ribeiro; Jonathan D Tyzack; Neera Borkakoti; Gemma L Holliday; Janet M Thornton
Journal:  J Biol Chem       Date:  2019-12-03       Impact factor: 5.157

10.  Organic solvent stability and long-term storage of myoglobin-based carbene transfer biocatalysts.

Authors:  Alfons J Pineda-Knauseder; David A Vargas; Rudi Fasan
Journal:  Biotechnol Appl Biochem       Date:  2020-07-09       Impact factor: 2.431

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