Literature DB >> 29490254

Stochastic Model of Maturation and Vesicular Exchange in Cellular Organelles.

Quentin Vagne1, Pierre Sens2.   

Abstract

The dynamical organization of membrane-bound organelles along intracellular transport pathways relies on vesicular exchange between organelles and on the maturation of the organelle's composition by enzymatic reactions or exchange with the cytoplasm. The relative importance of each mechanism in controlling organelle dynamics remains controversial, in particular for transport through the Golgi apparatus. Using a stochastic model, we identify two classes of dynamical behavior that can lead to full maturation of membrane-bound compartments. In the first class, maturation corresponds to the stochastic escape from a steady state in which export is dominated by vesicular exchange, and is very unlikely for large compartments. In the second class, it occurs in a quasi-deterministic fashion and is almost size independent. Whether a system belongs to the first or second class is largely controlled by homotypic fusion.
Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Year:  2018        PMID: 29490254      PMCID: PMC5984994          DOI: 10.1016/j.bpj.2017.12.018

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

Review 1.  The mechanisms of vesicle budding and fusion.

Authors:  Juan S Bonifacino; Benjamin S Glick
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

2.  Extinction of metastable stochastic populations.

Authors:  Michael Assaf; Baruch Meerson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-02-09

3.  A Rab GAP cascade defines the boundary between two Rab GTPases on the secretory pathway.

Authors:  Félix E Rivera-Molina; Peter J Novick
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-04       Impact factor: 11.205

4.  Pathways of protein secretion in eukaryotes.

Authors:  R B Kelly
Journal:  Science       Date:  1985-10-04       Impact factor: 47.728

5.  Generation of nonidentical compartments in vesicular transport systems.

Authors:  Reinhart Heinrich; Tom A Rapoport
Journal:  J Cell Biol       Date:  2005-01-17       Impact factor: 10.539

6.  Mutation of the COG complex subunit gene COG7 causes a lethal congenital disorder.

Authors:  Xiaohua Wu; Richard A Steet; Ognian Bohorov; Jaap Bakker; John Newell; Monty Krieger; Leo Spaapen; Stuart Kornfeld; Hudson H Freeze
Journal:  Nat Med       Date:  2004-04-25       Impact factor: 53.440

Review 7.  Membrane lipids: where they are and how they behave.

Authors:  Gerrit van Meer; Dennis R Voelker; Gerald W Feigenson
Journal:  Nat Rev Mol Cell Biol       Date:  2008-02       Impact factor: 94.444

Review 8.  The yeast Golgi apparatus: insights and mysteries.

Authors:  Effrosyni Papanikou; Benjamin S Glick
Journal:  FEBS Lett       Date:  2009-10-29       Impact factor: 4.124

Review 9.  Human diseases associated with form and function of the Golgi complex.

Authors:  Mariana G Bexiga; Jeremy C Simpson
Journal:  Int J Mol Sci       Date:  2013-09-10       Impact factor: 5.923

Review 10.  Journeys through the Golgi--taking stock in a new era.

Authors:  Scott Emr; Benjamin S Glick; Adam D Linstedt; Jennifer Lippincott-Schwartz; Alberto Luini; Vivek Malhotra; Brad J Marsh; Akihiko Nakano; Suzanne R Pfeffer; Catherine Rabouille; James E Rothman; Graham Warren; Felix T Wieland
Journal:  J Cell Biol       Date:  2009-11-09       Impact factor: 10.539

View more
  4 in total

1.  A minimal self-organisation model of the Golgi apparatus.

Authors:  Quentin Vagne; Jean-Patrick Vrel; Pierre Sens
Journal:  Elife       Date:  2020-08-05       Impact factor: 8.140

2.  A novel combinatorial approach of quantitative microscopy and in silico modeling deciphers Arf1-dependent Golgi size regulation.

Authors:  Prasanna Iyer; Sabyasachi Sutradhar; Raja Paul; Dibyendu Bhattacharyya
Journal:  Eur Phys J E Soft Matter       Date:  2019-12-12       Impact factor: 1.890

3.  Postsynaptic Stability and Variability Described by a Stochastic Model of Endosomal Trafficking.

Authors:  Taegon Kim; Keiko Tanaka-Yamamoto
Journal:  Front Cell Neurosci       Date:  2019-02-26       Impact factor: 5.505

4.  Stochastic reaction networks in dynamic compartment populations.

Authors:  Lorenzo Duso; Christoph Zechner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-31       Impact factor: 11.205

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.