| Literature DB >> 29489903 |
Cinzia Colombo1,2, Črtomir Podlipnik3, Leonardo Lo Presti1, Masahiro Niikura4, Andrew J Bennet2, Anna Bernardi1.
Abstract
The rise of drug-resistant influenza A virus strains motivates the development of new antiviral drugs, with different structural motifs and substitution. Recently, we explored the use of a bicyclic (Entities:
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Year: 2018 PMID: 29489903 PMCID: PMC5831633 DOI: 10.1371/journal.pone.0193623
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Sialic acid (α configuration), oseltamivir 1, zanamivir 2, peramivir 3 and the bicyclo[3.1.0]hexane scaffold 4.
Fig 2Sialic acid ring distortion during catalysis and mimic 4 in its predicted conformation.
Fig 3Compounds of general formula 5, described in this paper.
Fig 4Induced fit docking of ligand 4a (R = 4-phenylbenzyl) with N1 neuraminidase (source: pdb 2HU0).
Fig 5Docking of ligand 5 with various substitutions in N1 neuraminidases (sources: pdb 2HU0 and 2HU4).
(A) Docking of 5A R = CH(CH2CH3)2); (B) Docking of 5B ( and R = CH2CH3); (C) Docking of 5C and R = CH2CH(OH)(CH2OH).
Fig 6Synthesis of the key aziridine intermediate 12 and aziridine opening reaction.
Fig 7Synthesis of amino acids 16a-d.
Fig 8X-ray structure of 15c at room temperature, crystallized from acetone (4°C).
Right: crystal packing viewed along a is shown, with hydrogen atoms not involved in hydrogen bonds (red dashed lines) omitted for clarity. Left: asymmetric unit of 15c, with the atom numbering scheme. Thermal ellipsoids are drawn at the 30% probability level.
Fig 9Synthesis of guanidines 19a-d.
Fig 10Synthesis of the dihydroxypropoxy side chain derivatives 16e, 19e and 16f.
Fig 11Compounds used for control experiments for enzyme inhibition.
Control experiments with known NAIs.
Ki was determined for N1 wild-type andH274Y (both from virus A/Anhui/1/2005 H5N1) and N2 (A/Chicken/HongKong/G9/1997 H9N2).
| Compound | Ki | ||
|---|---|---|---|
| N1 | N1-H274Y | N2 | |
| 0.15 ± 0.08 nM | 86.6 ± 7.5 nM | 0.67 ± 0.10 nM | |
| 0.17 ± 0.02 nM | 16.2 ± 1.9 nM | 0.21 ± 0.06 nM | |
| 9.1 ± 1.3 μM | n.d. | 13.2 ± 4.0 μM | |