Literature DB >> 29487966

Mechanisms of antifreeze proteins investigated via the site-directed spin labeling technique.

Antonia Flores1, Justin C Quon1, Adiel F Perez1, Yong Ba2.   

Abstract

The site-directed spin labeling (SDSL) technique was used to examine the antifreeze mechanisms of type-I antifreeze proteins (AFPs). The effects on the growth of seed ice crystals by the spin-label groups attached to different side chains of the AFPs were observed, and the states of water molecules surrounding the spin-label groups were probed via analyses of variable-temperature (VT) dependent electron paramagnetic resonance (EPR) spectra. The first set of experiments revealed the antifreeze activities of the spin-labeled AFPs at the microscopic level, while the second set of experiments displayed those at the molecular level. The experimental results confirmed the putative ice-binding surface (IBS) of type-I AFPs. The VT EPR spectra indicate that type-I AFPs can inhibit the nucleation of seed ice crystals down to ~ - 20 °C in their aqueous solutions. Thus, the present authors believe that AFPs protect organisms from freezing damage in two ways: (1) inhibiting the nucleation of seed ice crystals, and (2) hindering the growth of seed ice crystals once they have formed. The first mechanism should play a more significant role in protecting against freezing damage among organisms living in cold environments. The VT EPR spectra also revealed that liquid-like water molecules existed around the spin-labeled non-ice-binding side chains of the AFPs frozen within the ice matrices, and ice surrounding the spin-label groups melted at subzero temperatures during the heating process. This manuscript concludes with the proposed model of antifreeze mechanisms of AFPs based on the experimental results.

Entities:  

Keywords:  Ice crystals; Ice growth inhibition; Ice nucleation inhibition; Site-directed spin labeling; Type-I antifreeze protein; VT EPR

Mesh:

Substances:

Year:  2018        PMID: 29487966      PMCID: PMC6709975          DOI: 10.1007/s00249-018-1285-3

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  40 in total

1.  Site directed spin labeling studies of Escherichia coli dihydroorotate dehydrogenase N-terminal extension.

Authors:  Sheila G Couto; M Cristina Nonato; Antonio J Costa-Filho
Journal:  Biochem Biophys Res Commun       Date:  2011-10-02       Impact factor: 3.575

2.  Solute effects on spin labels at an aqueous-exposed site in the flap region of HIV-1 protease.

Authors:  Luis Galiano; Mandy E Blackburn; Angelo M Veloro; Marco Bonora; Gail E Fanucci
Journal:  J Phys Chem B       Date:  2009-02-12       Impact factor: 2.991

3.  Effect of type III antifreeze protein dilution and mutation on the growth inhibition of ice.

Authors:  C I DeLuca; H Chao; F D Sönnichsen; B D Sykes; P L Davies
Journal:  Biophys J       Date:  1996-11       Impact factor: 4.033

4.  Ice-binding structure and mechanism of an antifreeze protein from winter flounder.

Authors:  F Sicheri; D S Yang
Journal:  Nature       Date:  1995-06-01       Impact factor: 49.962

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Authors:  C A Knight; A L DeVries; L D Oolman
Journal:  Nature       Date:  1984 Mar 15-21       Impact factor: 49.962

Review 6.  Type I 'antifreeze' proteins. Structure-activity studies and mechanisms of ice growth inhibition.

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Journal:  Eur J Biochem       Date:  1999-09

Review 7.  Probing structural transitions in both structured and disordered proteins using site-directed spin-labeling EPR spectroscopy.

Authors:  Sonia Longhi; Valérie Belle; André Fournel; Bruno Guigliarelli; Frédéric Carrière
Journal:  J Pept Sci       Date:  2011-02-24       Impact factor: 1.905

8.  Threonine side chain conformational population distribution of a type I antifreeze protein on interacting with ice surface studied via ¹³C-¹⁵N dynamic REDOR NMR.

Authors:  Yougang Mao; Myongho Jeong; Tieli Wang; Yong Ba
Journal:  Solid State Nucl Magn Reson       Date:  2011-03-23       Impact factor: 2.293

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Journal:  Eur J Biochem       Date:  1985-08-15

10.  Structure determination of a lone alpha-helical antifreeze protein from winter flounder.

Authors:  F Sicheri; D S Yang
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-05-01
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  2 in total

Review 1.  Antifreeze Proteins and Their Practical Utilization in Industry, Medicine, and Agriculture.

Authors:  Azadeh Eskandari; Thean Chor Leow; Mohd Basyaruddin Abdul Rahman; Siti Nurbaya Oslan
Journal:  Biomolecules       Date:  2020-12-09

Review 2.  Antifreeze Proteins: Novel Applications and Navigation towards Their Clinical Application in Cryobanking.

Authors:  Marlene Davis Ekpo; Jingxian Xie; Yuying Hu; Xiangjian Liu; Fenglin Liu; Jia Xiang; Rui Zhao; Bo Wang; Songwen Tan
Journal:  Int J Mol Sci       Date:  2022-02-27       Impact factor: 5.923

  2 in total

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