Literature DB >> 21470833

Threonine side chain conformational population distribution of a type I antifreeze protein on interacting with ice surface studied via ¹³C-¹⁵N dynamic REDOR NMR.

Yougang Mao1, Myongho Jeong, Tieli Wang, Yong Ba.   

Abstract

Antifreeze proteins (AFPs) provide survival mechanism for species living in subzero environments by lowering the freezing points of their body fluids effectively. The mechanism is attributed to AFPs' ability to inhibit the growth of seed ice crystals through adsorption on specific ice surfaces. We have applied dynamic REDOR (Rotational Echo Double Resonance) solid state NMR to study the threonine (Thr) side chain conformational population distribution of a site-specific Thr ¹³C(γ) and ¹⁵N doubly labeled type I AFP in frozen aqueous solution. It is known that the Thr side chains together with those of the 4th and 8th Alanine (Ala) residues commencing from the Thrs (the 1st) in the four 11-residue repeat units form the peptide ice-binding surface. The conformational information can provide structural insight with regard to how the AFP side chains structurally interact with the ice surface. χ-squared statistical analysis of the experimental REDOR data in fitting the theoretically calculated dynamic REDOR fraction curves indicates that when the AFP interacted with the ice surface in the frozen AFP solution, the conformations of the Thr side chains changed from the anti-conformations, as in the AFP crystal structure, to partial population in the anti-conformation and partial population in the two gauche conformations. This change together with the structural analysis indicates that the simultaneous interactions of the methyl groups and the hydroxyl groups of the Thr side chains with the ice surface could be the reason for the conformational population change. The analysis of the theoretical dynamic REDOR fraction curves shows that the set of experimental REDOR data may fit a number of theoretical curves with different population distributions. Thus, other structural information is needed to assist in determining the conformational population distribution of the Thr side chains. Published by Elsevier Inc.

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Year:  2011        PMID: 21470833      PMCID: PMC3100732          DOI: 10.1016/j.ssnmr.2011.03.002

Source DB:  PubMed          Journal:  Solid State Nucl Magn Reson        ISSN: 0926-2040            Impact factor:   2.293


  20 in total

1.  Carbon-proton dipolar decoupling in REDOR

Authors: 
Journal:  J Magn Reson       Date:  2000-07       Impact factor: 2.229

2.  Fluorescence microscopy evidence for quasi-permanent attachment of antifreeze proteins to ice surfaces.

Authors:  Natalya Pertaya; Christopher B Marshall; Carlos L DiPrinzio; Larry Wilen; Erik S Thomson; J S Wettlaufer; Peter L Davies; Ido Braslavsky
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

3.  REDOR dephasing by multiple spins in the presence of molecular motion.

Authors:  J M Goetz; J Schaefer
Journal:  J Magn Reson       Date:  1997-08       Impact factor: 2.229

4.  Insight into the binding of antifreeze proteins to ice surfaces via 13C spin lattice relaxation solid-state NMR.

Authors:  Yougang Mao; Yong Ba
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

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Journal:  Am Sci       Date:  1974 Nov-Dec       Impact factor: 0.548

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Journal:  Cryobiology       Date:  1972-10       Impact factor: 2.487

7.  Ice-binding structure and mechanism of an antifreeze protein from winter flounder.

Authors:  F Sicheri; D S Yang
Journal:  Nature       Date:  1995-06-01       Impact factor: 49.962

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Journal:  Nature       Date:  1984 Mar 15-21       Impact factor: 49.962

Review 9.  Antifreeze peptides and glycopeptides in cold-water fishes.

Authors:  A L DeVries
Journal:  Annu Rev Physiol       Date:  1983       Impact factor: 19.318

10.  New ice-binding face for type I antifreeze protein.

Authors:  J Baardsnes; L H Kondejewski; R S Hodges; H Chao; C Kay; P L Davies
Journal:  FEBS Lett       Date:  1999-12-10       Impact factor: 4.124

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  2 in total

1.  Effects of a type I antifreeze protein (AFP) on the melting of frozen AFP and AFP+solute aqueous solutions studied by NMR microimaging experiment.

Authors:  Yong Ba; Yougang Mao; Luiz Galdino; Zorigoo Günsen
Journal:  J Biol Phys       Date:  2012-11-07       Impact factor: 1.365

2.  Mechanisms of antifreeze proteins investigated via the site-directed spin labeling technique.

Authors:  Antonia Flores; Justin C Quon; Adiel F Perez; Yong Ba
Journal:  Eur Biophys J       Date:  2018-02-27       Impact factor: 1.733

  2 in total

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