Literature DB >> 29486434

"The devil's in the detail": Release of an expanded, enhanced and dynamically revised forensic STR Sequence Guide.

C Phillips1, K Butler Gettings2, J L King3, D Ballard4, M Bodner5, L Borsuk2, W Parson6.   

Abstract

The STR sequence template file published in 2016 as part of the considerations from the DNA Commission of the International Society for Forensic Genetics on minimal STR sequence nomenclature requirements, has been comprehensively revised and audited using the latest GRCh38 genome assembly. The list of forensic STRs characterized was expanded by including supplementary autosomal, X- and Y-chromosome microsatellites in less common use for routine DNA profiling, but some likely to be adopted in future massively parallel sequencing (MPS) STR panels. We outline several aspects of sequence alignment and annotation that required care and attention to detail when comparing sequences to GRCh37 and GRCh38 assemblies, as well as the necessary matching of MPS-based allele descriptions to previously established repeat region structures described in initial sequencing studies of the less well known forensic STRs. The revised sequence guide is now available in a dynamically updated FTP format from the STRidER website with a date-stamped change log to allow users to explore their own MPS data with the most up-to-date forensic STR sequence information compiled in a simple guide.
Copyright © 2018 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Indels; Massively parallel sequencing MPS; SNPs; Sequence alignment; Short tandem repeat STR; dbSNP

Mesh:

Year:  2018        PMID: 29486434     DOI: 10.1016/j.fsigen.2018.02.017

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  17 in total

1.  Enhanced mixture interpretation with macrohaplotypes based on long-read DNA sequencing.

Authors:  Jianye Ge; Jonathan King; Sammed Mandape; Bruce Budowle
Journal:  Int J Legal Med       Date:  2021-08-11       Impact factor: 2.686

2.  Sequencing of human identification markers in an Uyghur population using the MiSeq FGxTM Forensic Genomics System.

Authors:  Halimureti Simayijiang; Niels Morling; Claus Børsting
Journal:  Forensic Sci Res       Date:  2020-09-10

3.  Development and validation of a novel 133-plex forensic STR panel (52 STRs and 81 Y-STRs) using single-end 400 bp massive parallel sequencing.

Authors:  Haoliang Fan; Lingxiang Wang; Changhui Liu; Xiaoyu Lu; Xuding Xu; Kai Ru; Pingming Qiu; Chao Liu; Shao-Qing Wen
Journal:  Int J Legal Med       Date:  2021-11-06       Impact factor: 2.791

4.  Sequence-based U.S. population data for 27 autosomal STR loci.

Authors:  Katherine Butler Gettings; Lisa A Borsuk; Carolyn R Steffen; Kevin M Kiesler; Peter M Vallone
Journal:  Forensic Sci Int Genet       Date:  2018-07-19       Impact factor: 4.882

5.  Report from the STRAND Working Group on the 2019 STR sequence nomenclature meeting.

Authors:  Katherine Butler Gettings; David Ballard; Martin Bodner; Lisa A Borsuk; Jonathan L King; Walther Parson; Christopher Phillips
Journal:  Forensic Sci Int Genet       Date:  2019-09-21       Impact factor: 4.882

6.  The forensic landscape and the population genetic analyses of Hainan Li based on massively parallel sequencing DNA profiling.

Authors:  Haoliang Fan; Zhengming Du; Fenfen Wang; Xiao Wang; Shao-Qing Wen; Lingxiang Wang; Panxin Du; Hai Liu; Shengping Cao; Zhenming Luo; Bingbing Han; Peiyu Huang; Bofeng Zhu; Pingming Qiu
Journal:  Int J Legal Med       Date:  2021-04-13       Impact factor: 2.686

7.  Concordance and characterization of massively parallel sequencing at 58 STRs in a Tibetan population.

Authors:  Hui Li; Cheng Zhang; Guoqing Song; Ke Ma; Yu Cao; Xueying Zhao; Qinrui Yang; Jianhui Xie
Journal:  Mol Genet Genomic Med       Date:  2021-02-25       Impact factor: 2.183

8.  An evaluation of the SureID 23comp Human Identification Kit for kinship testing.

Authors:  Hussain M Alsafiah; Ali A Aljanabi; Sibte Hadi; Saleh S Alturayeif; William Goodwin
Journal:  Sci Rep       Date:  2019-11-14       Impact factor: 4.379

9.  Identification of sequence polymorphisms at 58 STRs and 94 iiSNPs in a Tibetan population using massively parallel sequencing.

Authors:  Dan Peng; Yinming Zhang; Han Ren; Haixia Li; Ran Li; Xuefeng Shen; Nana Wang; Erwen Huang; Riga Wu; Hongyu Sun
Journal:  Sci Rep       Date:  2020-07-22       Impact factor: 4.379

10.  The STRidER Report on Two Years of Quality Control of Autosomal STR Population Datasets.

Authors:  Martin Bodner; Walther Parson
Journal:  Genes (Basel)       Date:  2020-08-07       Impact factor: 4.096

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.