Literature DB >> 31586814

Report from the STRAND Working Group on the 2019 STR sequence nomenclature meeting.

Katherine Butler Gettings1, David Ballard2, Martin Bodner3, Lisa A Borsuk4, Jonathan L King5, Walther Parson6, Christopher Phillips7.   

Abstract

This report summarizes topics discussed at the STR sequence nomenclature meeting hosted by the STRAND Working Group in April 2019. Invited attendees for this meeting included researchers known-to-us to be developing STR sequence-based nomenclature schemata, scientific representatives from vendors developing STR sequence bioinformatic methods, DNA intelligence database curators, and academic experts in STR genomics. The goal of this meeting was to provide a forum for individuals developing nomenclature schemata to present and discuss their ideas, encouraging mutual awareness, identification of differences in approaches, opposing aspects, and opportunities for parallelization while some approaches are still under development. Published by Elsevier B.V.

Entities:  

Keywords:  Bioinformatics; Nomenclature; STR; Sequence

Mesh:

Year:  2019        PMID: 31586814      PMCID: PMC8796868          DOI: 10.1016/j.fsigen.2019.102165

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  38 in total

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2.  A nomenclature for sequence-based forensic DNA analysis.

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Journal:  Forensic Sci Int Genet       Date:  2019-06-05       Impact factor: 4.882

3.  Flanking region variation of ForenSeq™ DNA Signature Prep Kit STR and SNP loci in Yavapai Native Americans.

Authors:  Frank R Wendt; Jonathan L King; Nicole M M Novroski; Jennifer D Churchill; Jillian Ng; Robert F Oldt; Kelly L McCulloh; Jessica A Weise; David Glenn Smith; Sreetharan Kanthaswamy; Bruce Budowle
Journal:  Forensic Sci Int Genet       Date:  2017-02-27       Impact factor: 4.882

4.  Evaluation of the MiSeq FGx system for use in forensic casework.

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Journal:  Int J Legal Med       Date:  2019-01-02       Impact factor: 2.686

5.  Genetic analysis of the Yavapai Native Americans from West-Central Arizona using the Illumina MiSeq FGx™ forensic genomics system.

Authors:  Frank R Wendt; Jennifer D Churchill; Nicole M M Novroski; Jonathan L King; Jillian Ng; Robert F Oldt; Kelly L McCulloh; Jessica A Weise; David Glenn Smith; Sreetharan Kanthaswamy; Bruce Budowle
Journal:  Forensic Sci Int Genet       Date:  2016-05-17       Impact factor: 4.882

6.  Use of the LUS in sequence allele designations to facilitate probabilistic genotyping of NGS-based STR typing results.

Authors:  Rebecca S Just; Jodi A Irwin
Journal:  Forensic Sci Int Genet       Date:  2018-02-21       Impact factor: 4.882

7.  Concordance of the ForenSeq™ system and characterisation of sequence-specific autosomal STR alleles across two major population groups.

Authors:  Laurence Devesse; David Ballard; Lucinda Davenport; Immy Riethorst; Gabriella Mason-Buck; Denise Syndercombe Court
Journal:  Forensic Sci Int Genet       Date:  2017-11-04       Impact factor: 4.882

8.  DNA recommendations--1994 report concerning further recommendations of the DNA Commission of the ISFH regarding PCR-based polymorphisms in STR (short tandem repeat) systems.

Authors: 
Journal:  Vox Sang       Date:  1995       Impact factor: 2.144

9.  Identification of repeat sequence heterogeneity at the polymorphic short tandem repeat locus HUMTH01[AATG]n and reassignment of alleles in population analysis by using a locus-specific allelic ladder.

Authors:  C Puers; H A Hammond; L Jin; C T Caskey; J W Schumm
Journal:  Am J Hum Genet       Date:  1993-10       Impact factor: 11.025

10.  Massively parallel sequencing analysis of nondegraded and degraded DNA mixtures using the ForenSeq™ system in combination with EuroForMix software.

Authors:  Hsiao-Lin Hwa; Ming-Yih Wu; Wan-Chia Chung; Tsang-Ming Ko; Chih-Peng Lin; Hsiang-I Yin; Tsui-Ting Lee; James Chun-I Lee
Journal:  Int J Legal Med       Date:  2018-10-29       Impact factor: 2.686

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  5 in total

1.  Massively parallel sequencing of 25 autosomal STRs including SE33 in four population groups for forensic applications.

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2.  Exploring STR sequencing for forensic DNA intelligence databasing using the Austrian National DNA Database as an example.

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Review 3.  An Introductory Overview of Open-Source and Commercial Software Options for the Analysis of Forensic Sequencing Data.

Authors:  Tunde I Huszar; Katherine B Gettings; Peter M Vallone
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4.  Identification of sequence polymorphisms at 58 STRs and 94 iiSNPs in a Tibetan population using massively parallel sequencing.

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Journal:  Sci Rep       Date:  2020-07-22       Impact factor: 4.379

5.  The STRidER Report on Two Years of Quality Control of Autosomal STR Population Datasets.

Authors:  Martin Bodner; Walther Parson
Journal:  Genes (Basel)       Date:  2020-08-07       Impact factor: 4.096

  5 in total

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